# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uubT	106	11.55	a.7.6.1	139951
2gbaA	105	14.25		
1v37A	177	20.45	c.60.1.1	113497
1xn5A	146	21.33	d.129.3.5	115574
1ah7	245	22.67		
1rmwA	212	25.16		
2giaA	195	31.77	d.18.1.4	135221
1qqhA	144	34.18	b.91.1.1	28404
2dtrA	226	37.41	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1sskA	158	40.23	b.148.1.1	105986
1jiwI	106	40.73	b.61.2.1	63078
1qisA	396	41.33	c.67.1.1	34284
1h6kZ	98	47.85	d.58.7.1	60686
2btlA	134	51.78	b.148.1.1	129154
1smpI	101	52.73	b.61.2.1	27417
2e9qA	459	56.23		
2ex4A	241	58.68	c.66.1.42	132516
1kb0A	677	66.32	a.3.1.6,b.70.1.1	68378,68379
2ditA	112	69.65	d.58.7.1	131533
2o0rA	411	70.42		
1mp1A	111	71.17	a.188.1.1	91382
2ofzA	138	73.49		
2ffcA	353	78.61	c.1.2.3	133378
1hllA	32	79.68	j.94.1.1	70966
2idqA	105	86.72		
2ivwA	113	87.03		
2a2kA	175	88.24		
2v36A	376	88.55