# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uubT	106	12.58	a.7.6.1	139951
1sskA	158	22.81	b.148.1.1	105986
1ah7	245	25.65		
1rmwA	212	26.52		
1v37A	177	41.07	c.60.1.1	113497
1h6kZ	98	41.21	d.58.7.1	60686
2gbaA	105	42.13		
1mp1A	111	43.30	a.188.1.1	91382
2dtrA	226	49.40	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2e9qA	459	50.01		
1smpI	101	54.26	b.61.2.1	27417
2ex4A	241	55.39	c.66.1.42	132516
1qisA	396	58.72	c.67.1.1	34284
1jiwI	106	60.11	b.61.2.1	63078
2giaA	195	64.29	d.18.1.4	135221
1t0tV	248	67.96	d.58.4.10	106229
1hllA	32	70.24	j.94.1.1	70966
1kb0A	677	70.68	a.3.1.6,b.70.1.1	68378,68379
1qqhA	144	71.02	b.91.1.1	28404
2btlA	134	79.03	b.148.1.1	129154
1mk4A	157	83.98	d.108.1.1	84979
1a0rG	65	89.92	a.137.3.1	19639