# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uubT	106	10.88	a.7.6.1	139951
1xn5A	146	23.52	d.129.3.5	115574
1ah7	245	27.59		
1rmwA	212	27.63		
1smpI	101	28.22	b.61.2.1	27417
1v37A	177	29.41	c.60.1.1	113497
2dtrA	226	32.46	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2gbaA	105	34.75		
1jiwI	106	36.18	b.61.2.1	63078
2giaA	195	36.25	d.18.1.4	135221
2e9qA	459	39.22		
1qqhA	144	39.95	b.91.1.1	28404
1h6kZ	98	45.22	d.58.7.1	60686
1sskA	158	49.01	b.148.1.1	105986
1qisA	396	51.20	c.67.1.1	34284
2btlA	134	53.67	b.148.1.1	129154
2ofzA	138	53.98		
2a2kA	175	55.56		
2v36A	376	71.07		
1t0tV	248	72.27	d.58.4.10	106229
2ditA	112	74.62	d.58.7.1	131533
2o0rA	411	77.11		
2ds3A	761	77.30		
1nwzA	125	79.91	d.110.3.1	86370
3pyp	125	82.23		
1mp1A	111	82.71	a.188.1.1	91382
1mk4A	157	87.83	d.108.1.1	84979