# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qisA	396	10.93	c.67.1.1	34284
1h6kZ	98	20.85	d.58.7.1	60686
1v37A	177	23.56	c.60.1.1	113497
2gbaA	105	28.02		
1sskA	158	28.80	b.148.1.1	105986
1kb0A	677	29.26	a.3.1.6,b.70.1.1	68378,68379
2uubT	106	35.26	a.7.6.1	139951
2a2kA	175	55.10		
1rmwA	212	58.07		
1ah7	245	62.34		
2btlA	134	78.54	b.148.1.1	129154
1t62A	166	80.73	b.122.1.4	106541
1ahxA	396	89.57	c.67.1.1	34293