# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 7.44e-25 c.55.3.10 120785 1u04A 771 6.66e-23 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 0.1870 2f2hA 773 1.680 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2o8bB 1022 1.857 2yxtA 312 1.927 2ch5A 347 2.422 c.55.1.5,c.55.1.5 130453,130454 1zc6A 305 4.503 c.55.1.5,c.55.1.5 124888,124889 1rypB 250 5.955 d.153.1.4 41933 1rj9A 304 6.272 a.24.13.1,c.37.1.10 97553,97554 2ax4A 198 7.297 1bu6O 501 7.735 c.55.1.4,c.55.1.4 33499,33500 3b5eA 223 8.432 2qghA 425 8.636 2ivnA 330 9.054 1mpxA 615 9.110 b.18.1.13,c.69.1.21 85041,85042 1rypF 233 9.426 d.153.1.4 41937 2zf5O 497 12.67 1jeyA 609 13.22 b.131.1.1,c.62.1.3 90370,90371 1fuiA 591 13.52 b.43.2.1,c.85.1.1 25674,35444 1z15A 344 14.21 1tfr 305 14.47 2bgxA 261 14.54 a.20.1.1,d.118.1.1 128504,128505 2vg3A 284 15.29 1z45A 699 15.38 b.30.5.4,c.2.1.2 124427,124428 2i71A 400 16.62 2gsoA 393 17.49 2qtwB 546 18.31 2dplA 308 19.08 1gcyA 527 19.34 b.71.1.1,c.1.8.1 27788,28775 2q01A 497 19.36 1io2A 213 19.57 c.55.3.1 62612 2h7cA 542 20.50 c.69.1.1 136207 1satA 471 20.54 b.80.7.1,d.92.1.6 28014,40300 2basA 431 20.95 c.1.33.1,d.110.6.2 128244,128245 1xngA 268 23.46 c.26.2.1 122186 2napA 723 24.86 b.52.2.2,c.81.1.1 26926,35334 1nmsA 249 24.98 c.17.1.1 85879 1cs0A 1073 25.09 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2hoeA 380 25.19 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1z6rA 406 25.48 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1u4nA 310 25.87 c.69.1.2 113021 2p3eA 420 27.26 1cjbA 231 27.75 c.61.1.1 34079 1lrzA 426 27.83 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2q0iA 303 28.12 1pj5A 830 29.46 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1oe1A 336 30.19 b.6.1.3,b.6.1.3 86891,86892 1ua7A 422 31.87 b.71.1.1,c.1.8.1 107759,107760 2d4wA 504 32.00 1czaN 917 32.92 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1l7mA 211 33.64 c.108.1.4 73664 1ewqA 765 33.69 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1dpeA 507 35.51 c.94.1.1 35799 3cetA 334 35.71 2nrrA 159 36.15 1lldA 319 37.10 c.2.1.5,d.162.1.1 30177,42144 2vg2A 284 37.19 2b3yA 888 37.62 c.8.2.1,c.83.1.1 127803,127804 1yq2A 1024 39.12 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 3bh0A 315 39.17 1y56B 382 40.40 1q15A 503 40.91 c.26.2.1,d.153.1.1 95538,95539 1txuA 273 41.35 a.222.1.1 107439 2z08A 137 42.82 2fvkA 559 43.29 b.92.1.3,c.1.9.6 134204,134205 1ayl 541 43.59 2p02A 396 45.10 2e18A 257 45.94 1i39A 225 47.22 c.55.3.1 61585 2nxfA 322 47.42 1z7gA 217 49.36 c.61.1.1 124624 4ubpC 570 49.67 b.92.1.1,c.1.9.2 28431,29053 1bu8A 452 51.55 b.12.1.2,c.69.1.19 23647,34795 1a5zA 319 52.01 c.2.1.5,d.162.1.1 30181,42148 1uirA 314 52.80 c.66.1.17 99429 1a0cA 438 53.53 c.1.15.3 29529 2vsnA 568 53.59 2z07A 420 53.78 2gupA 292 54.49 c.55.1.10,c.55.1.10 135744,135745 1fj2A 232 55.39 c.69.1.14 34720 1ve5A 311 56.02 c.79.1.1 120013 1s3iA 310 56.40 b.46.1.1,c.65.1.1 98435,98436 1t0bA 252 57.27 c.23.16.6 106199 2pezA 179 57.60 2o2gA 223 58.89 1fsuA 492 59.56 c.76.1.2 35032 2yx0A 342 60.07 2jbhA 225 60.31 1tjyA 316 61.05 c.93.1.1 107062 1g0uC 243 62.51 d.153.1.4 41948 2e5fA 325 62.68 2ga9A 297 63.58 c.66.1.25 134885 2fp3A 316 63.63 1b5qA 472 63.65 c.3.1.2,d.16.1.5 30404,37968 1xdzA 240 64.54 c.66.1.20 115196 1gq6A 313 64.99 c.42.1.1 70341 1gpmA 525 65.57 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1c7qA 445 66.23 c.80.1.2 35307 1a9xA 1058 66.91 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2prdA 174 67.19 b.40.5.1 25435 1rypD 241 67.72 d.153.1.4 41935 1booA 323 68.62 c.66.1.11 34248 2pmlX 348 69.22 2pr7A 137 69.42 1s4bP 674 69.45 d.92.1.5 105252 2r01A 210 69.80 1ni4A 365 70.93 c.36.1.11 85728 1vcoA 550 71.57 c.23.16.1,c.37.1.10 108508,108509 1oz2A 331 72.02 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2g3mA 693 72.15 1uwkA 557 72.65 e.51.1.1 108065 2jgzB 260 72.98 3di4A 286 74.00 1zysA 273 74.16 2qtpA 194 75.38 1o08A 221 76.16 c.108.1.6 86525 2o6xA 310 76.63 1tv8A 340 76.71 c.1.28.3 107352 1xkpC 143 79.57 d.198.1.1 122088 1jmvA 141 79.80 c.26.2.4 66897 1v5xA 203 80.41 c.1.2.4 100377 1oywA 523 80.60 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1oxwA 373 81.00 c.19.1.3 87539 1ukcA 522 82.39 c.69.1.17 107911 2cmdA 312 82.52 c.2.1.5,d.162.1.1 30135,42102 3c86A 328 83.04 1fgkA 310 83.76 d.144.1.7 41693 1ni5A 433 84.92 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2veoA 441 86.14 2a0mA 316 86.50 c.42.1.1 125960 1lox 662 86.74 2pfsA 150 87.87 1rkqA 282 89.79 c.108.1.10 97621