# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.53e-32 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.05e-29 c.55.3.10 120785 1zc6A 305 0.06557 c.55.1.5,c.55.1.5 124888,124889 2qh9A 184 0.1000 2ax4A 198 3.968 1tfrA 305 5.026 a.60.7.1,c.120.1.2 18081,33351 1rypF 233 8.084 d.153.1.4 41937 1rypD 241 9.513 d.153.1.4 41935 1uehA 253 9.580 c.101.1.1 99259 1f75A 249 12.06 c.101.1.1 59662 1kqpA 271 12.62 c.26.2.1 72883 1g0uC 243 18.90 d.153.1.4 41948 1l6rA 227 20.27 c.108.1.10 77768 2iw1A 374 21.45 c.87.1.8 137738 2vfxA 206 21.52 1wb9A 800 22.10 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1fzrA 138 22.41 c.52.1.17 33336 2q8kA 401 24.90 2v3vA 723 26.15 1m0dA 138 27.70 c.52.1.17 74354 2e2oA 299 28.07 1nw3A 416 29.29 c.66.1.31 86288 1e3mA 800 29.41 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1xkpC 143 30.31 d.198.1.1 122088 2napA 723 30.39 b.52.2.2,c.81.1.1 26926,35334 1q9jA 422 31.27 c.43.1.2,c.43.1.2 104590,104591 1bi5A 389 33.05 c.95.1.2,c.95.1.2 35985,35986 1yqzA 438 33.08 1musA 477 38.90 c.55.3.4 79494 1poiA 317 39.53 c.124.1.2 34153 1cl8A 276 41.56 c.52.1.1 33230 1s2oA 244 42.12 c.108.1.10 118846 1gtdA 85 43.61 d.284.1.1 76344 1rypC 244 44.40 d.153.1.4 41934 1p5dX 463 44.53 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1yarA 233 45.99 d.153.1.4 122837 2cghA 268 46.44 2e7zA 727 46.47 2d2jA 329 48.41 c.1.9.3 131175 1z7gA 217 49.93 c.61.1.1 124624 1rypB 250 51.87 d.153.1.4 41933 1ru8A 232 52.00 c.26.2.1 97849 2zogA 479 52.49 1auk 489 54.64 2pezA 179 54.83 1rypG 244 55.98 d.153.1.4 41938 1j97A 211 56.29 c.108.1.4 62753 2bqxA 173 57.00 1rypH 205 57.53 d.153.1.4 41876 1k2yX 463 58.45 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1lwjA 441 63.91 b.71.1.1,c.1.8.1 74303,74304 1rypA 243 63.93 d.153.1.4 41932 1zkdA 387 64.21 c.66.1.52 125184 1ei6A 406 64.36 c.76.1.4 90443 2fuvA 549 65.81 2zd1A 557 67.36 1ldg 316 67.67 1i88A 389 68.10 c.95.1.2,c.95.1.2 66070,66071 2ou3A 161 70.18 2z0hA 197 70.59 1yb0A 159 72.23 d.118.1.1 122865 1hr6B 443 72.48 d.185.1.1,d.185.1.1 61166,61167 1g0uG 252 72.71 d.153.1.4 41952 2vg2A 284 75.24 2j13A 247 75.95 c.6.2.3 137934 1jeyB 565 76.02 b.131.1.2,c.62.1.4 90372,90373 3cx5B 352 76.70 1m7gA 211 77.07 c.37.1.4 78724 2o0tA 467 78.68 2fi1A 190 78.93 c.108.1.3 133508 2dyoA 297 81.43 1khvA 516 82.74 e.8.1.4 68627 2acvA 463 83.81 2gj4A 824 86.06 c.87.1.4 135256 1ojqA 212 86.67 d.166.1.1 93146 2ohcA 289 87.23 2fpqA 444 87.93 1v5xA 203 88.20 c.1.2.4 100377 1ukcA 522 89.28 c.69.1.17 107911