# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	3.15e-29	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	2.24e-27	c.55.3.10	120785
1zc6A	305	0.1119	c.55.1.5,c.55.1.5	124888,124889
2qh9A	184	0.2354		
1rypD	241	10.78	d.153.1.4	41935
1wb9A	800	12.47	a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1	120833,120834,120835,120836
1rypF	233	15.23	d.153.1.4	41937
1q9jA	422	22.64	c.43.1.2,c.43.1.2	104590,104591
1ru8A	232	23.67	c.26.2.1	97849
1cl8A	276	23.67	c.52.1.1	33230
1v4sA	455	23.95	c.55.1.3,c.55.1.3	100309,100310
1ojqA	212	28.22	d.166.1.1	93146
2ax4A	198	29.39		
2v3vA	723	32.16		
1uozA	315	32.88	c.6.1.1	113354
2vfxA	206	33.98		
1nnwA	252	34.35	d.159.1.5	80674
1rypH	205	35.10	d.153.1.4	41876
1s3iA	310	35.57	b.46.1.1,c.65.1.1	98435,98436
1yarA	233	36.60	d.153.1.4	122837
1rypA	243	36.93	d.153.1.4	41932
1k2yX	463	36.94	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
1p5dX	463	38.15	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
2e2oA	299	40.60		
1g0uG	252	40.88	d.153.1.4	41952
2acvA	463	41.26		
1wqaA	455	45.47		
2q8kA	401	46.38		
1g0uC	243	46.92	d.153.1.4	41948
1l6rA	227	48.12	c.108.1.10	77768
1tfrA	305	49.20	a.60.7.1,c.120.1.2	18081,33351
3bijA	285	49.35		
1f75A	249	49.76	c.101.1.1	59662
1musA	477	50.81	c.55.3.4	79494
2vg2A	284	51.28		
1ex2A	189	51.31	c.51.4.2	33225
2bqxA	173	51.37		
1j97A	211	54.25	c.108.1.4	62753
1yqzA	438	56.42		
1yb0A	159	57.60	d.118.1.1	122865
1r45A	204	58.40	d.166.1.1	111683
1m0dA	138	59.19	c.52.1.17	74354
1rypB	250	63.23	d.153.1.4	41933
2pezA	179	64.47		
2napA	723	69.53	b.52.2.2,c.81.1.1	26926,35334
2z08A	137	70.93		
1fzrA	138	71.20	c.52.1.17	33336
1dbfA	127	71.66	d.79.1.2	39761
1xkpC	143	75.98	d.198.1.1	122088
1ryp2	233	76.16		
1ei6A	406	77.00	c.76.1.4	90443
2iw1A	374	77.56	c.87.1.8	137738
2o8bB	1022	78.24		
2vg3A	284	80.07		
2fuvA	549	80.96		
2geyA	158	82.01		
2d2jA	329	82.10	c.1.9.3	131175
1jx7A	117	86.14	c.114.1.1	77195
1zboA	210	87.44	b.122.1.10	124859
1rypC	244	87.87	d.153.1.4	41934
2qghA	425	88.03		
2vchA	480	88.42		
1khvA	516	88.70	e.8.1.4	68627
3ciwA	348	89.24