Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1w9hA	1.2900e+00	1w9hA/T0487-1w9hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
1u04A	1.4260e+00	1u04A/T0487-1u04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
3bblA	1.6872e+01	3bblA/T0487-3bblA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qulA	3.1644e+01	2qulA/T0487-2qulA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oj5A	3.1981e+01	1oj5A/T0487-1oj5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.110.3.8
2g2cA	3.4085e+01	2g2cA/T0487-2g2cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.57.1.1
1ur4A	3.7009e+01	1ur4A/T0487-1ur4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.8.3
1ujpA	3.7613e+01	1ujpA/T0487-1ujpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.2.4
2dztA	3.8698e+01	2dztA/T0487-2dztA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2z00A	3.8934e+01	2z00A/T0487-2z00A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cnyA	4.1222e+01	3cnyA/T0487-3cnyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1geqA	4.3755e+01	1geqA/T0487-1geqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.2.4
2vdwA	4.6337e+01	2vdwA/T0487-2vdwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ywrA	4.7692e+01	2ywrA/T0487-2ywrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2obbA	4.7706e+01	2obbA/T0487-2obbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wkyA	4.8990e+01	1wkyA/T0487-1wkyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.18.1.31 c.1.8.3
1yx1A	5.0965e+01	1yx1A/T0487-1yx1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.15.7
1q0rA	5.1880e+01	1q0rA/T0487-1q0rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.69.1.28
2rgyA	5.3638e+01	2rgyA/T0487-2rgyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qw5A	5.5184e+01	2qw5A/T0487-2qw5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001