# List of top-scoring protein chains for T0487.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	0.7202	c.55.3.10	120785
2e09A	248	8.258		
2dzwA	248	8.506		
2dzpA	248	8.702		
1geqA	248	8.765	c.1.2.4	28589
2dzuA	248	9.220		
2dzsA	248	9.674		
2dztA	248	11.04		
2dzvA	248	11.39		
2p3pA	207	13.85		
1zl0A	311	18.66	c.8.10.1,c.23.16.7	125231,125232
2aumA	317	20.40	c.8.10.1,c.23.16.7	127330,127331
1zrsA	317	20.80	c.8.10.1,c.23.16.7	125556,125557
2dzxA	248	21.93		
2aunA	317	26.67	c.8.10.1,c.23.16.7	127334,127335
2iumA	248	33.99		
2p9tA	416	53.31		
1qopA	268	55.28	c.1.2.4	28570
1kfcA	268	55.84	c.1.2.4	77371
1beuA	268	56.92	c.1.2.4	28574
2livA	344	56.98	c.93.1.1	35708
1z15A	344	57.17		
1tjpA	268	58.82	c.1.2.4	119290
1kfbA	268	59.42	c.1.2.4	77369
1ofuA	320	64.17	c.32.1.1,d.79.2.1	86972,86973
2h1hA	334	66.57		
2gt1A	326	67.20		
1vf7A	369	69.67	f.46.1.1	108557
1t5eA	360	70.27	f.46.1.1	106436
1fy1A	225	73.21	b.47.1.2	65065
1qcyA	193	83.45	c.62.1.1	96340
1l1qA	186	83.55	c.61.1.1	77653
2vawA	394	85.58		
1wq5A	268	87.97	c.1.2.4	121163