# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.415	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	5.640		
2dztA	248	7.634		
2d73A	738	10.11		
1qopA	268	10.17	c.1.2.4	28570
3bblA	287	10.94		
3c3kA	285	11.29		
2gruA	368	13.29		
1uqwA	509	14.22	c.94.1.1	99799
2fb2A	340	14.66		
1ujpA	271	15.76	c.1.2.4	99462
2ekcA	262	16.29		
1qgoA	264	18.31	c.92.1.2	35596
1geqA	248	18.50	c.1.2.4	28589
1jftA	340	19.75	a.35.1.5,c.93.1.1	66652,66653
2h3hA	313	22.77		
2fepA	289	22.87		
1w9hA	427	24.96	c.55.3.10	120785
1tv8A	340	25.72	c.1.28.3	107352
2g3mA	693	26.12		
1xsjA	778	26.34	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2tysA	268	28.46	c.1.2.4	28572
2rgyA	290	29.49		
1efaA	333	32.10	a.35.1.5,c.93.1.1	17106,35691
2qmjA	870	33.33		
1dbqA	289	34.67	c.93.1.1	35666
1kfcA	268	35.90	c.1.2.4	77371
1qpzA	340	36.62	a.35.1.5,c.93.1.1	17097,35673
2hrcA	359	38.00	c.92.1.1	136687
1d1gA	168	39.76	c.71.1.1	34889
2gmwA	211	41.64		
2qvcA	313	42.43		
2iksA	293	43.01		
2c4wA	176	44.20		
1jdpA	441	48.87	c.93.1.1	62906
2higA	487	50.10		
1byrA	155	51.80	d.136.1.1	41450
2o20A	332	52.70		
2hzqA	174	53.13		
1vpwA	340	54.61	a.35.1.5,c.93.1.1	17087,35680
2b3zA	373	54.64	c.71.1.2,c.97.1.2	127807,127808
1qv9A	283	56.95	c.127.1.1	96356
1dozA	309	57.25	c.92.1.1	35592
2f2hA	773	58.74	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
1zzmA	259	65.65	c.1.9.12	125911
2ywxA	157	66.56		
1oi2A	366	66.81	c.119.1.2	103802
2driA	271	67.64	c.93.1.1	35637
3c6qA	311	67.92		
1ea9C	583	68.27	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1rxdA	159	70.50	c.45.1.1	111959
1u9yA	284	71.74	c.61.1.2,c.61.1.2	119655,119656
2dri	271	77.34		
2f5tX	233	78.74		
2f62A	161	79.58	c.23.14.1	133021
2uubK	129	80.49	c.55.4.1	139942
1ii7A	333	82.67	d.159.1.4	62415
1vb5A	276	82.96	c.124.1.5	113604
1x24A	180	83.85		
1j31A	262	84.20	d.160.1.2	90808
2p4gA	270	85.15