# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.350	b.34.14.1,c.55.3.10	107539,107540
3brqA	296	2.941		
3bblA	287	3.671		
2dztA	248	4.923		
1qopA	268	5.110	c.1.2.4	28570
3c3kA	285	8.225		
2ekcA	262	9.396		
1ujpA	271	10.73	c.1.2.4	99462
2d73A	738	11.99		
1geqA	248	12.90	c.1.2.4	28589
2fb2A	340	12.91		
2fepA	289	16.25		
1uqwA	509	17.07	c.94.1.1	99799
1jftA	340	18.46	a.35.1.5,c.93.1.1	66652,66653
1qgoA	264	19.15	c.92.1.2	35596
1qv9A	283	21.50	c.127.1.1	96356
2iksA	293	21.93		
1tv8A	340	22.29	c.1.28.3	107352
2higA	487	22.94		
2tysA	268	24.14	c.1.2.4	28572
1w9hA	427	26.29	c.55.3.10	120785
1kfcA	268	28.05	c.1.2.4	77371
2gruA	368	29.76		
1d1gA	168	30.07	c.71.1.1	34889
1jdpA	441	30.91	c.93.1.1	62906
2yxoA	267	31.95		
2g3mA	693	33.35		
2hzqA	174	33.99		
2qmjA	870	34.17		
2rgyA	290	35.61		
2driA	271	37.60	c.93.1.1	35637
2ebn	289	40.15		
2ioyA	283	40.27		
2o20A	332	40.33		
2h3hA	313	42.10		
1xsjA	778	42.69	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1qpzA	340	45.61	a.35.1.5,c.93.1.1	17097,35673
1tlfA	301	46.30	c.93.1.1	35687
2h4aA	325	47.14		
2hrcA	359	49.29	c.92.1.1	136687
1efaA	333	49.86	a.35.1.5,c.93.1.1	17106,35691
1ea9C	583	50.22	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
3b79A	129	51.27		
2dri	271	55.27		
3ctpA	330	57.61		
3pga1	337	58.74		
1oi2A	366	59.52	c.119.1.2	103802
1rxdA	159	59.59	c.45.1.1	111959
2gmwA	211	61.86		
2yxbA	161	66.39		
2c4wA	176	69.00		
2f06A	144	70.35	d.58.18.11,d.58.18.11	132652,132653
1e39A	571	71.35	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
1oj5A	132	73.46	d.110.3.8	93087
1qupA	222	74.67	b.1.8.1,d.58.17.1	22301,39352
1igs	248	75.41		
1dbqA	289	75.93	c.93.1.1	35666
4pgaA	337	78.75	c.88.1.1	35565
2pa5A	314	80.84		
2himA	358	83.71		
1rd5A	262	84.12	c.1.2.4	111772
3cucA	291	85.68		
1mylA	53	89.35	a.43.1.1	17427
2f2hA	773	89.48	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2f48A	555	89.92	c.89.1.1	132915