# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ur4A	399	0.4173	c.1.8.3	113402
3bblA	287	0.6128		
1q0rA	298	2.115	c.69.1.28	95508
2ywiA	196	4.147		
2aouA	292	5.190	c.66.1.19	127100
1vc4A	254	5.922	c.1.2.4	100557
1yx1A	264	8.274	c.1.15.7	124169
2g2cA	167	11.14	c.57.1.1	134535
2obbA	142	12.03		
1ujpA	271	12.61	c.1.2.4	99462
1wkyA	464	13.14	b.18.1.31,c.1.8.3	120992,120993
3bzwA	274	13.25		
1oj5A	132	15.03	d.110.3.8	93087
2z00A	426	20.71		
1k77A	260	21.04	c.1.15.5	72096
1bx4A	345	23.56	c.72.1.1	34935
3cvgA	294	23.64		
2rgyA	290	25.78		
2ywrA	216	26.60		
2bw0A	329	26.99	b.46.1.1,c.65.1.1	129303,129304
3cnyA	301	27.30		
1nrwA	288	28.17	c.108.1.10	86128
1y81A	138	28.94	c.2.1.8	122731
2rjoA	332	30.86		
2zadA	345	31.65		
1tjyA	316	31.79	c.93.1.1	107062
1gq6A	313	34.57	c.42.1.1	70341
2ek8A	421	35.17		
2fliA	220	35.58	c.1.2.2	133714
2c1lA	358	36.04		
1y3tA	337	36.92	b.82.1.5	122600
1od6A	160	37.76	c.26.1.3	86836
1ur3M	319	38.05	c.1.7.1	99806
1gxuA	91	38.30	d.58.10.1	76378
1bqcA	302	39.36	c.1.8.3	28831
2qulA	290	40.88		
2cvbA	188	41.29	c.47.1.10	130859
1piiA	452	45.15	c.1.2.4,c.1.2.4	28559,28563
1krhA	338	48.67	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2vdwB	287	50.42		
1fjgK	129	50.63	c.55.4.1	33733
2dztA	248	50.74		
3czqA	304	50.94		
1gca	309	52.32		
2h3hA	313	52.32		
1xxlA	239	53.03	c.66.1.41	116203
1w9hA	427	53.87	c.55.3.10	120785
1vkyA	347	55.25	e.53.1.1	108696
2f5tX	233	56.63		
8abp	306	56.97		
1a53	247	58.49		
2i33A	258	59.82		
2vdaA	828	60.21		
2hlzA	312	61.93		
1jq5A	370	62.12	e.22.1.2	67084
1xzwA	426	62.55	b.1.12.1,d.159.1.1	116270,116271
2hx0A	154	64.55	d.290.1.3	136830
1th8B	116	65.69	c.13.2.1	106909
2akoA	251	66.94	c.73.1.3	126923
2ywnA	157	67.02		
1q7zA	566	68.26	c.1.21.2,c.1.26.1	96090,96091
2cftA	298	68.84		
2pbqA	178	69.86		
1gvnB	287	70.26	c.37.1.21	76354
8abpA	306	71.16	c.93.1.1	35647
1hdiA	413	78.92	c.86.1.1	60964
1rd5A	262	80.45	c.1.2.4	111772
2bidA	197	82.38	f.1.4.1	43398
1u04A	771	82.75	b.34.14.1,c.55.3.10	107539,107540
2i57A	438	83.18		
1geqA	248	84.29	c.1.2.4	28589
1o7jA	327	86.14	c.88.1.1	81140
2bdrA	175	87.76	b.82.1.14	128342
1tqjA	230	88.24	c.1.2.2	107228