# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	9.738	c.55.3.10	120785
2ywiA	196	12.32		
2ywrA	216	16.78		
2vdwB	287	21.26		
2obbA	142	21.85		
1ur4A	399	22.34	c.1.8.3	113402
2bdrA	175	25.73	b.82.1.14	128342
2g2cA	167	25.84	c.57.1.1	134535
2z00A	426	26.39		
3bzwA	274	29.35		
1f20A	435	32.70	b.43.4.1,c.25.1.4	64932,64933
1krhA	338	35.21	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
3bblA	287	39.52		
1y81A	138	42.55	c.2.1.8	122731
1nrwA	288	43.52	c.108.1.10	86128
2fliA	220	45.67	c.1.2.2	133714
1meoA	209	48.63	c.65.1.1	79035
1yx1A	264	51.26	c.1.15.7	124169
1jkxA	212	55.13	c.65.1.1	66813
1oj5A	132	58.14	d.110.3.8	93087
1th8B	116	63.90	c.13.2.1	106909
2zadA	345	66.89		
1tjyA	316	67.35	c.93.1.1	107062
1y5eA	169	70.68	c.57.1.1	122632
2ek8A	421	72.46		
1gca	309	74.70		
1q0rA	298	77.87	c.69.1.28	95508
2pjkA	178	82.53		
2fiqA	420	82.87	c.1.10.7	133527
2rjoA	332	85.66		
2cftA	298	86.99		
2rdxA	379	90.00