# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ur4A	399	1.312	c.1.8.3	113402
3bblA	287	2.676		
1q0rA	298	5.209	c.69.1.28	95508
2g2cA	167	12.78	c.57.1.1	134535
2ywiA	196	13.93		
1w9hA	427	16.28	c.55.3.10	120785
1wkyA	464	17.05	b.18.1.31,c.1.8.3	120992,120993
1vc4A	254	18.04	c.1.2.4	100557
3bzwA	274	19.13		
2aouA	292	21.31	c.66.1.19	127100
2obbA	142	24.36		
2z00A	426	26.49		
1a53	247	26.50		
1ujpA	271	27.53	c.1.2.4	99462
1bx4A	345	34.99	c.72.1.1	34935
2f5tX	233	35.38		
1oj5A	132	36.79	d.110.3.8	93087
1nrwA	288	37.08	c.108.1.10	86128
2rjoA	332	38.30		
1ur3M	319	40.16	c.1.7.1	99806
1f20A	435	40.75	b.43.4.1,c.25.1.4	64932,64933
2fliA	220	41.86	c.1.2.2	133714
2ywrA	216	43.90		
1krhA	338	45.33	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2bw0A	329	46.67	b.46.1.1,c.65.1.1	129303,129304
2c1lA	358	49.26		
2hx0A	154	50.73	d.290.1.3	136830
2ek8A	421	51.45		
2akoA	251	53.51	c.73.1.3	126923
1tjyA	316	53.96	c.93.1.1	107062
2gj8A	172	54.59	c.37.1.8	135270
1yx1A	264	54.69	c.1.15.7	124169
1y3tA	337	55.30	b.82.1.5	122600
1x1zA	252	58.55	c.1.2.3	121613
1vkyA	347	59.55	e.53.1.1	108696
1gca	309	61.13		
1piiA	452	61.42	c.1.2.4,c.1.2.4	28559,28563
2fvyA	309	62.05	c.93.1.1	134227
1k77A	260	62.36	c.1.15.5	72096
1hjsA	332	62.53	c.1.8.3	83492
1u04A	771	63.16	b.34.14.1,c.55.3.10	107539,107540
2zadA	345	68.05		
2r91A	286	68.15		
1y81A	138	70.58	c.2.1.8	122731
1gxuA	91	73.34	d.58.10.1	76378
1jq5A	370	75.05	e.22.1.2	67084
1y5eA	169	77.53	c.57.1.1	122632
2rgyA	290	79.14		
2h3hA	313	79.49		
1bqcA	302	80.55	c.1.8.3	28831
2pjkA	178	82.51		
1jkxA	212	83.99	c.65.1.1	66813