# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ur4A	399	0.6384	c.1.8.3	113402
3bblA	287	1.839		
1q0rA	298	5.142	c.69.1.28	95508
1wkyA	464	9.299	b.18.1.31,c.1.8.3	120992,120993
2ek8A	421	10.33		
1vc4A	254	13.96	c.1.2.4	100557
2g2cA	167	16.44	c.57.1.1	134535
2ywiA	196	19.09		
2obbA	142	21.02		
1w9hA	427	21.41	c.55.3.10	120785
3bzwA	274	21.55		
1yx1A	264	24.77	c.1.15.7	124169
1oj5A	132	25.40	d.110.3.8	93087
2aouA	292	28.37	c.66.1.19	127100
2gj8A	172	35.36	c.37.1.8	135270
2z00A	426	37.74		
2ywrA	216	40.41		
1ujpA	271	41.64	c.1.2.4	99462
1f20A	435	41.67	b.43.4.1,c.25.1.4	64932,64933
2c1lA	358	42.00		
2fliA	220	43.48	c.1.2.2	133714
1y81A	138	44.57	c.2.1.8	122731
1x1zA	252	45.09	c.1.2.3	121613
2bw0A	329	45.44	b.46.1.1,c.65.1.1	129303,129304
1gq6A	313	47.13	c.42.1.1	70341
1ur3M	319	49.02	c.1.7.1	99806
1nrwA	288	49.32	c.108.1.10	86128
1y3tA	337	50.15	b.82.1.5	122600
2rgyA	290	50.16		
1vkyA	347	51.82	e.53.1.1	108696
1bx4A	345	54.57	c.72.1.1	34935
1tjyA	316	56.07	c.93.1.1	107062
2bdrA	175	56.69	b.82.1.14	128342
2akoA	251	57.49	c.73.1.3	126923
2nyiA	195	57.65		
1krhA	338	58.15	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2f5tX	233	61.39		
1a53	247	62.11		
2vdwB	287	67.27		
1u04A	771	70.55	b.34.14.1,c.55.3.10	107539,107540
2dykA	161	72.03		
1ionA	243	72.69	c.37.1.10	62633
2pbqA	178	72.70		
2hx0A	154	73.48	d.290.1.3	136830
1sc6A	404	75.30	c.2.1.4,c.23.12.1,d.58.18.1	118932,118933,118934
1xzwA	426	76.68	b.1.12.1,d.159.1.1	116270,116271
1gxuA	91	80.97	d.58.10.1	76378
2ywnA	157	82.92		
1piiA	452	85.02	c.1.2.4,c.1.2.4	28559,28563
1fjgK	129	85.51	c.55.4.1	33733