# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ur4A	399	0.8732	c.1.8.3	113402
3bblA	287	1.067		
1q0rA	298	5.741	c.69.1.28	95508
1wkyA	464	6.794	b.18.1.31,c.1.8.3	120992,120993
2ywiA	196	9.231		
1vc4A	254	10.24	c.1.2.4	100557
1w9hA	427	10.54	c.55.3.10	120785
2ek8A	421	12.81		
1yx1A	264	13.27	c.1.15.7	124169
2g2cA	167	13.79	c.57.1.1	134535
1oj5A	132	14.35	d.110.3.8	93087
3bzwA	274	18.22		
2obbA	142	19.38		
1f20A	435	24.28	b.43.4.1,c.25.1.4	64932,64933
2aouA	292	24.34	c.66.1.19	127100
1nrwA	288	24.94	c.108.1.10	86128
2z00A	426	25.62		
2c1lA	358	26.50		
1ujpA	271	27.14	c.1.2.4	99462
2fliA	220	27.41	c.1.2.2	133714
1ur3M	319	28.28	c.1.7.1	99806
2bw0A	329	30.45	b.46.1.1,c.65.1.1	129303,129304
1y3tA	337	30.49	b.82.1.5	122600
1u04A	771	31.34	b.34.14.1,c.55.3.10	107539,107540
1vkyA	347	31.97	e.53.1.1	108696
2rgyA	290	32.80		
2rjoA	332	33.33		
1y81A	138	33.83	c.2.1.8	122731
1tjyA	316	36.94	c.93.1.1	107062
1x1zA	252	41.06	c.1.2.3	121613
1bx4A	345	44.02	c.72.1.1	34935
1gca	309	47.22		
2akoA	251	48.77	c.73.1.3	126923
2ywrA	216	48.97		
2dztA	248	49.53		
2f5tX	233	51.83		
2ayyA	121	56.58	c.23.1.6	127576
1gq6A	313	58.82	c.42.1.1	70341
1nvpB	57	60.30	a.32.1.1	92211
2hx0A	154	66.08	d.290.1.3	136830
1lt8A	406	66.20	c.1.26.1	78186
1xzwA	426	67.63	b.1.12.1,d.159.1.1	116270,116271
2zadA	345	69.18		
2h3hA	313	70.66		
2bdrA	175	71.21	b.82.1.14	128342
1piiA	452	72.05	c.1.2.4,c.1.2.4	28559,28563
1fjgK	129	72.27	c.55.4.1	33733
1k77A	260	80.45	c.1.15.5	72096
2nyiA	195	82.19		
2vdwB	287	82.58		
1j6oA	268	83.37	c.1.9.12	77088
8abp	306	85.95		
2qulA	290	87.57