# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ywiA	196	9.520		
1wkyA	464	16.50	b.18.1.31,c.1.8.3	120992,120993
3bblA	287	19.75		
2obbA	142	20.50		
1w9hA	427	21.13	c.55.3.10	120785
1yx1A	264	23.92	c.1.15.7	124169
2g2cA	167	27.60	c.57.1.1	134535
3bzwA	274	30.13		
1nrwA	288	31.78	c.108.1.10	86128
1krhA	338	33.74	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1oj5A	132	36.80	d.110.3.8	93087
1bx4A	345	37.57	c.72.1.1	34935
1q0rA	298	39.29	c.69.1.28	95508
2z00A	426	43.17		
1tjyA	316	43.31	c.93.1.1	107062
1y3tA	337	44.77	b.82.1.5	122600
2hjgA	436	49.78		
2fliA	220	51.13	c.1.2.2	133714
1pb7A	292	52.07	c.94.1.1	88025
2h3hA	313	65.69		
1th8B	116	66.07	c.13.2.1	106909
2vdwB	287	66.26		
2esbA	188	67.47		
2zadA	345	69.86		
2dykA	161	69.93		
1vc4A	254	70.68	c.1.2.4	100557
1ur4A	399	75.71	c.1.8.3	113402
4pgaA	337	76.85	c.88.1.1	35565
1y81A	138	82.25	c.2.1.8	122731
1hdiA	413	83.53	c.86.1.1	60964
2pjkA	178	89.79