Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1w9hA	5.1379e-01	1w9hA/T0487-1w9hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
1u04A	2.6530e+00	1u04A/T0487-1u04A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oj5A	9.5879e+00	1oj5A/T0487-1oj5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.110.3.8
2qulA	1.4075e+01	2qulA/T0487-2qulA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nyiA	1.4293e+01	2nyiA/T0487-2nyiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fp1D	2.3754e+01	1fp1D/T0487-1fp1D-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qw5A	2.4581e+01	2qw5A/T0487-2qw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gh1A	2.7309e+01	2gh1A/T0487-2gh1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g2cA	2.7713e+01	2g2cA/T0487-2g2cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.57.1.1
2hk0A	2.9080e+01	2hk0A/T0487-2hk0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cnyA	3.0362e+01	3cnyA/T0487-3cnyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s3iA	3.3580e+01	1s3iA/T0487-1s3iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.46.1.1 c.65.1.1
1kpgA	3.4052e+01	1kpgA/T0487-1kpgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bkwA	3.5218e+01	3bkwA/T0487-3bkwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ov6A	3.8086e+01	2ov6A/T0487-2ov6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vlmA	3.8419e+01	1vlmA/T0487-1vlmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.41
3bgvA	3.8744e+01	3bgvA/T0487-3bgvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fp2A	3.9335e+01	1fp2A/T0487-1fp2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vdwA	4.0253e+01	2vdwA/T0487-2vdwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ywrA	4.0768e+01	2ywrA/T0487-2ywrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001