# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	4.473	c.55.3.10	120785
2nyiA	195	5.466		
1oj5A	132	8.875	d.110.3.8	93087
2g2cA	167	9.541	c.57.1.1	134535
2qulA	290	9.823		
1s3iA	310	15.08	b.46.1.1,c.65.1.1	98435,98436
1y63A	184	18.45	c.37.1.1	116494
1fobA	334	20.84	c.1.8.3	83255
3cnyA	301	26.13		
1mkzA	172	26.42	c.57.1.1	84998
1f3lA	321	31.59	c.66.1.6	59630
2q02A	272	33.30		
2c1lA	358	36.21		
2vdaA	828	37.19		
2obbA	142	37.53		
2rjoA	332	39.20		
2hk0A	309	40.60		
2cftA	298	42.25		
2ywrA	216	43.84		
1gxuA	91	45.19	d.58.10.1	76378
2r6r1	338	46.03		
2tysA	268	47.54	c.1.2.4	28572
2z00A	426	47.77		
2hyxA	352	47.89		
1wkyA	464	48.18	b.18.1.31,c.1.8.3	120992,120993
1vkyA	347	48.29	e.53.1.1	108696
1th8B	116	52.49	c.13.2.1	106909
1i60A	278	53.17	c.1.15.4	71118
2qw5A	335	54.35		
1o2dA	371	54.57	e.22.1.2	86591
2uubK	129	55.12	c.55.4.1	139942
1bg4A	302	56.37	c.1.8.3	28806
1geqA	248	56.81	c.1.2.4	28589
4pgaA	337	58.70	c.88.1.1	35565
1rk6A	496	61.05	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601
2zg5A	397	61.19		
1xp3A	307	62.07	c.1.15.1	122210
1yx1A	264	62.09	c.1.15.7	124169
2ov6A	101	62.22		
1gkpA	458	64.63	b.92.1.3,c.1.9.6	70231,70232
2vdwB	287	64.63		
2hx1A	284	64.96		
2z1yA	397	65.06		
1mdl	359	68.55		
2blnA	305	69.39	b.46.1.1,c.65.1.1	128734,128735
1vlmA	219	70.96	c.66.1.41	108836
1hjsA	332	71.25	c.1.8.3	83492
2ekcA	262	72.69		
1ltqA	301	72.88	c.108.1.9,c.37.1.1	78208,78209
1iuqA	367	73.37	c.112.1.1	90703
2pjkA	178	73.85		
1vgwA	231	78.64	c.68.1.13	100612
2gzxA	265	86.18		
1di6A	195	86.45	c.57.1.1	33863
1o7jA	327	87.64	c.88.1.1	81140
1d2eA	397	88.00	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2gm3A	175	88.22	c.26.2.4	135354