# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	2.550	c.55.3.10	120785
2nyiA	195	4.959		
1oj5A	132	8.737	d.110.3.8	93087
2g2cA	167	12.43	c.57.1.1	134535
2qulA	290	19.19		
1s3iA	310	20.60	b.46.1.1,c.65.1.1	98435,98436
2z00A	426	20.61		
2hk0A	309	25.27		
1vkyA	347	26.67	e.53.1.1	108696
2ov6A	101	28.62		
2c1lA	358	29.81		
1mkzA	172	33.40	c.57.1.1	84998
3cnyA	301	35.16		
1fobA	334	35.24	c.1.8.3	83255
2q02A	272	35.26		
2rjoA	332	44.54		
1vc4A	254	45.64	c.1.2.4	100557
2r6r1	338	46.95		
2cftA	298	47.36		
1iuqA	367	49.05	c.112.1.1	90703
2uubK	129	49.19	c.55.4.1	139942
1tx2A	297	49.30	c.1.21.1	107420
1eyeA	280	49.62	c.1.21.1	29672
2vdaA	828	49.99		
1geqA	248	51.53	c.1.2.4	28589
2obbA	142	51.66		
1rk6A	496	52.15	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601
2hyxA	352	54.48		
2gm3A	175	57.98	c.26.2.4	135354
1v7pC	200	62.85	c.62.1.1	108408
1qc5A	192	62.93	c.62.1.1	34147
2qw5A	335	64.17		
2ayyA	121	66.70	c.23.1.6	127576
1o2dA	371	71.74	e.22.1.2	86591
1th8B	116	72.01	c.13.2.1	106909
1wdiA	345	73.04	e.53.1.1	114535
2exrA	524	73.13		
2vapA	364	73.14		
1di6A	195	73.51	c.57.1.1	33863
1pt6A	213	73.74	c.62.1.1	95091
1nvpB	57	74.03	a.32.1.1	92211
2hx0A	154	75.96	d.290.1.3	136830
2hx1A	284	76.12		
1tjyA	316	76.62	c.93.1.1	107062
2j67A	178	77.30		
1xwyA	264	79.08	c.1.9.12	122411
2gzxA	265	79.49		
1m7jA	484	84.07	b.92.1.6,b.92.1.6,c.1.9.11	78732,78733,78734
1hjsA	332	85.40	c.1.8.3	83492
1y63A	184	86.25	c.37.1.1	116494