Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1w9hA	6.0224e-30	1w9hA/T0487-1w9hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
1u04A	3.2454e-28	1u04A/T0487-1u04A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1jx6A	9.3109e+00	1jx6A/T0487-1jx6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1j0dA	1.1843e+01	1j0dA/T0487-1j0dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.79.1.1
1uiuA	1.2524e+01	1uiuA/T0487-1uiuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vr5A	1.2785e+01	1vr5A/T0487-1vr5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dppA	1.4432e+01	1dppA/T0487-1dppA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oi4A	1.4868e+01	1oi4A/T0487-1oi4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1heiA	1.6113e+01	1heiA/T0487-1heiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xocA	1.7331e+01	1xocA/T0487-1xocA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1twdA	1.7435e+01	1twdA/T0487-1twdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jetA	1.8657e+01	1jetA/T0487-1jetA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uqwA	2.1285e+01	1uqwA/T0487-1uqwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zlqA	2.4086e+01	1zlqA/T0487-1zlqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gudA	2.4600e+01	1gudA/T0487-1gudA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
2pfsA	2.5101e+01	2pfsA/T0487-2pfsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2grvA	2.5848e+01	2grvA/T0487-2grvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2v6vA	2.5856e+01	2v6vA/T0487-2v6vA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dxnA	2.6910e+01	2dxnA/T0487-2dxnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nooA	2.7629e+01	2nooA/T0487-2nooA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001