# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	9.79e-32	c.55.3.10	120785
1u04A	771	2.67e-31	b.34.14.1,c.55.3.10	107539,107540
1j0dA	341	4.521	c.79.1.1	83902
1qopB	396	6.247	c.79.1.1	35270
1jx6A	342	7.922	c.93.1.1	67406
1ma3A	253	8.592	c.31.1.5	78883
2dxnA	274	9.693		
1gudA	288	10.53	c.93.1.1	83326
2yvuA	186	14.73		
1glcG	501	26.51	c.55.1.4,c.55.1.4	33519,33520
1nnt	328	28.63		
1e1dA	553	29.52	e.26.1.1	43363
1yc5A	246	31.01	c.31.1.5	122910
2gy9C	206	33.44		
1jqfA	334	33.95	c.94.1.2	67086
1vpwA	340	34.44	a.35.1.5,c.93.1.1	17087,35680
1uh6A	100	36.06	d.15.1.1	99394
1oneA	436	36.57	c.1.11.1,d.54.1.1	29200,38844
3cz8A	319	37.12		
2h5eA	529	37.50		
1es9A	232	39.07	c.23.10.3	31340
2bi7A	384	40.01		
2gwmA	200	40.29		
2qvcA	313	43.70		
1shuX	182	44.00	c.62.1.1	98882
1a5kC	566	44.41	b.92.1.1,c.1.9.2	28425,29047
2fepA	289	45.51		
1zjaA	557	48.45		
1bu6O	501	50.11	c.55.1.4,c.55.1.4	33499,33500
2ehbD	143	52.39		
1m6iA	493	53.41	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2z1eA	342	54.45		
1vb5A	276	54.62	c.124.1.5	113604
1mf7A	194	56.31	c.62.1.1	84937
1vl4A	447	59.00	d.283.1.1	108718
1y7pA	223	59.74	c.23.1.7,d.58.18.12	122708,122709
1fyvA	161	60.86	c.23.2.1	31127
3c6qA	311	62.57		
3bblA	287	75.28		
2pceA	386	76.52		
3bboO	135	78.11		
2afbA	351	82.68	c.72.1.1	126674
1o20A	427	83.69	c.82.1.1	86556
2e4uA	555	86.41		
2oxnA	340	88.30