# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	4.62e-28	c.55.3.10	120785
1u04A	771	1.92e-26	b.34.14.1,c.55.3.10	107539,107540
1xmxA	385	1.280	c.52.1.26	115568
1jx6A	342	1.883	c.93.1.1	67406
1m1nB	522	2.736	c.92.2.3	78418
2hqbA	296	4.270		
2rjoA	332	5.161		
3d02A	303	5.185		
2dri	271	5.386		
1u0mA	382	5.549	c.95.1.2,c.95.1.2	107557,107558
2ioyA	283	6.141		
1gudA	288	6.338	c.93.1.1	83326
1qh8B	519	6.853	c.92.2.3	35634
8abp	306	7.066		
1rj9A	304	8.266	a.24.13.1,c.37.1.10	97553,97554
2iksA	293	9.480		
1gca	309	9.671		
3b9qA	302	10.37		
2driA	271	11.45	c.93.1.1	35637
2h3hA	313	12.68		
1bykA	255	13.32	c.93.1.1	35706
2qvcA	313	13.45		
1dbqA	289	14.00	c.93.1.1	35666
1tjyA	316	14.14	c.93.1.1	107062
1m1nA	491	14.53	c.92.2.3	78417
3bczA	293	14.72		
2ebn	289	15.50		
8abpA	306	15.61	c.93.1.1	35647
1jyeA	349	16.19	c.93.1.1	67455
2fqxA	318	17.59		
2c4wA	176	19.07		
2qu7A	288	19.62		
3ctpA	330	20.08		
1z15A	344	20.24		
2r91A	286	24.26		
3c6qA	311	24.75		
2fepA	289	26.07		
2r8wA	332	27.22		
3cb6A	444	27.81		
1xesA	413	27.92		
2purA	292	28.22		
1o5kA	306	28.48	c.1.10.1	92504
2qy9A	309	30.70		
2v9dA	343	30.77		
2og2A	359	31.04		
2fn9A	290	31.08		
2fvyA	309	32.28	c.93.1.1	134227
1qh8A	478	33.20	c.92.2.3	35633
2o20A	332	35.43		
3c3kA	285	35.54		
1fuiA	591	37.52	b.43.2.1,c.85.1.1	25674,35444
2ojpA	292	41.48		
2z26A	347	41.89		
2vojA	371	41.90		
1usgA	346	43.24	c.93.1.1	99864
2vc6A	292	44.74		
2qh8A	302	45.03		
1tvzA	388	46.03	c.95.1.2,c.95.1.2	107367,107368
2atsA	292	47.47	c.1.10.1	127306
1io2A	213	47.58	c.55.3.1	62612
1hnjA	317	48.45	c.95.1.2,c.95.1.2	35969,35970
1itxA	419	50.77	c.1.8.5,d.26.3.1	71425,71426
2ebdA	309	55.02		
1peaA	385	55.42	c.93.1.1	35662
1yslA	402	56.13		
2pcqA	283	57.63		
1edtA	271	57.88	c.1.8.5	28993
1pea	385	58.24		
1b6rA	355	58.47	b.84.2.1,c.30.1.1,d.142.1.2	28241,31648,41493
1hl2A	297	58.92	c.1.10.1	83581
1ohvA	472	59.14	c.67.1.4	93031
3brsA	289	59.57		
2ywiA	196	59.61		
1jkmA	358	61.47	c.69.1.2	34633
2g4rA	160	62.35		
1rypF	233	65.66	d.153.1.4	41937
1gdhA	320	65.70	c.2.1.4,c.23.12.1	30095,31355
1gtzA	156	65.91	c.23.13.1	70539
2q62A	247	66.59		
1x1oA	286	66.90		
3ce9A	354	68.38		
1i88A	389	71.49	c.95.1.2,c.95.1.2	66070,66071
2jbmA	299	74.10		
2dc1A	236	76.52		
2g2cA	167	77.07	c.57.1.1	134535
1mkzA	172	77.19	c.57.1.1	84998
1frb	315	77.32		
2gwgA	350	80.01	c.1.9.15	135805
2cukA	311	80.41		
1xpkC	388	80.54	c.95.1.2,c.95.1.2	115747,115748
1vljA	407	81.90	e.22.1.2	108832
2qh9A	184	82.88		
3cpxA	321	84.13		
1tedA	393	84.86	c.95.1.2	106807
1y56B	382	85.23		
1q1rA	431	85.69	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1ujpA	271	86.72	c.1.2.4	99462
2pjkA	178	88.55