# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 9.39e-46 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.02e-45 c.55.3.10 120785 1jx6A 342 0.7387 c.93.1.1 67406 2yvtA 260 1.409 1mkzA 172 1.476 c.57.1.1 84998 1gudA 288 1.853 c.93.1.1 83326 2qh9A 184 2.289 2dxnA 274 2.355 2nxfA 322 4.676 2hy1A 280 4.770 2j01Q 141 5.512 1zc6A 305 8.724 c.55.1.5,c.55.1.5 124888,124889 1f0iA 504 9.728 d.136.1.2,d.136.1.2 59566,59567 1bu6O 501 10.03 c.55.1.4,c.55.1.4 33499,33500 1iuqA 367 12.37 c.112.1.1 90703 2pjkA 178 14.06 2dri 271 16.18 2gqwA 408 16.20 2g2cA 167 16.79 c.57.1.1 134535 2fqxA 318 18.76 2q8uA 336 18.79 1t9kA 347 19.86 c.124.1.5 106721 1zsxA 347 20.02 1tjyA 316 20.23 c.93.1.1 107062 8abp 306 21.51 1vpt 348 23.96 1i5gA 144 24.23 c.47.1.10 61784 2f5tX 233 24.53 1cfr 285 24.92 1lqaA 346 27.49 c.1.7.1 84674 2hqbA 296 27.64 1qe3A 489 30.40 c.69.1.1 34630 1yloA 348 30.51 b.49.3.1,c.56.5.4 123659,123660 1o2dA 371 30.77 e.22.1.2 86591 1vpvA 300 32.28 c.119.1.1 113975 3cpxA 321 32.85 1v0wA 506 32.98 d.136.1.2,d.136.1.2 108220,108221 1st9A 143 33.09 c.47.1.10 98987 1jaeA 471 33.21 b.71.1.1,c.1.8.1 27773,28760 1j0hA 588 33.26 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2apjA 260 33.98 c.23.10.7 127128 1usgA 346 34.09 c.93.1.1 99864 2aaaA 484 35.01 b.71.1.1,c.1.8.1 27777,28764 2is8A 164 35.93 1frb 315 36.90 2v3gA 283 39.75 1xzoA 174 40.09 c.47.1.10 122474 1exbA 332 40.87 c.1.7.1 28666 1dbqA 289 41.91 c.93.1.1 35666 2fvgA 340 42.09 b.49.3.1,c.56.5.4 134201,134202 1k30A 368 42.20 c.112.1.1 68067 2uytA 489 42.53 1zxxA 319 42.64 1f75A 249 43.63 c.101.1.1 59662 1pz1A 333 43.78 c.1.7.1 95390 1fuiA 591 43.79 b.43.2.1,c.85.1.1 25674,35444 1gcyA 527 46.09 b.71.1.1,c.1.8.1 27788,28775 1si7A 369 46.75 d.265.1.4 98883 1o8xA 146 47.01 c.47.1.10 86681 2hq9A 149 47.24 b.45.1.1 136659 1w32A 348 47.91 c.1.8.3 114120 1gakA 141 50.31 a.19.1.1 16415 2pgfA 371 50.73 2e4uA 555 51.24 1r85A 379 51.43 c.1.8.3 104839 2hejA 323 52.25 1vi9A 299 53.14 c.72.1.5 100750 2csuA 457 53.27 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1ekeA 230 53.98 c.55.3.1 33572 1q77A 138 54.10 c.26.2.4 96023 1vflA 356 55.39 c.1.9.1 120041 2g7zA 282 55.81 2zivA 311 56.01 2c4wA 176 57.29 1cqxA 403 58.23 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1khcA 147 58.72 b.34.9.2 68608 2fepA 289 59.19 2pt0A 340 61.06 2ohhA 404 61.96 1bedA 181 65.01 c.47.1.13 90330 1qopB 396 65.18 c.79.1.1 35270 1hdoA 206 65.80 c.2.1.2 60965 1bykA 255 65.90 c.93.1.1 35706 1kqfB 294 65.94 d.58.1.5,f.23.22.1 75900,75901 2vfxA 206 68.12 2tysA 268 68.40 c.1.2.4 28572 2e1vA 454 69.38 1fnnA 389 69.80 a.4.5.11,c.37.1.20 16129,32426 2glfA 450 70.24 1jubA 311 70.59 c.1.4.1 90908 1pfkA 320 72.16 c.89.1.1 35575 1m1nB 522 73.70 c.92.2.3 78418 1m7xA 617 74.10 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2a7mA 250 74.25 2v5xA 388 74.67 1pyfA 312 75.01 c.1.7.1 95334 1uhvA 500 75.23 b.71.1.2,c.1.8.3 99402,99403 2ppwA 216 77.05 1vheA 373 78.12 b.49.3.1,c.56.5.4 100669,100670 1ihcA 188 78.66 c.57.1.1 62379 2dskA 311 78.67 2bfgA 503 79.18 b.71.1.2,c.1.8.3 128423,128424 2pbqA 178 81.37 2zf5O 497 81.40 1qh8A 478 82.57 c.92.2.3 35633 1vmeA 410 84.20 c.23.5.1,d.157.1.3 108893,108894 2h30A 164 86.92 1x89A 178 87.48 b.60.1.1 121799 2g4rA 160 87.72 2dq6A 870 87.83 2vupA 190 87.93 1gveA 327 88.67 c.1.7.1 70597 2r8wA 332 89.00 1uf3A 228 89.13 d.159.1.6 99317