# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 2.32e-42 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 7.57e-42 c.55.3.10 120785 1jx6A 342 0.7726 c.93.1.1 67406 1gudA 288 1.100 c.93.1.1 83326 2qh9A 184 2.012 1mkzA 172 3.650 c.57.1.1 84998 1cfr 285 4.057 2dxnA 274 6.261 1usgA 346 6.560 c.93.1.1 99864 2yvtA 260 6.757 2nxfA 322 8.859 1z15A 344 9.458 2hy1A 280 9.712 1iuqA 367 9.875 c.112.1.1 90703 1r85A 379 9.941 c.1.8.3 104839 1f0iA 504 9.97 d.136.1.2,d.136.1.2 59566,59567 1k30A 368 14.04 c.112.1.1 68067 8abp 306 14.52 1zsxA 347 15.26 2fvgA 340 15.40 b.49.3.1,c.56.5.4 134201,134202 1tjyA 316 15.91 c.93.1.1 107062 2liv 344 16.23 1zc6A 305 16.58 c.55.1.5,c.55.1.5 124888,124889 2dri 271 17.19 1vgwA 231 17.26 c.68.1.13 100612 2tysA 268 18.37 c.1.2.4 28572 2fepA 289 18.80 1q77A 138 19.41 c.26.2.4 96023 1yloA 348 19.92 b.49.3.1,c.56.5.4 123659,123660 2fqxA 318 21.19 1xgkA 352 22.50 c.2.1.2 115286 1j0hA 588 25.86 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1w32A 348 25.90 c.1.8.3 114120 2pgfA 371 28.35 1vpt 348 28.57 1dbqA 289 30.84 c.93.1.1 35666 1vheA 373 30.92 b.49.3.1,c.56.5.4 100669,100670 2db3A 434 31.68 1zxxA 319 31.80 2ar9A 278 32.20 1gt6A 269 34.32 c.69.1.17 76342 2pjkA 178 34.75 1i1wA 303 35.54 c.1.8.3 76732 3cpxA 321 37.32 2bijA 305 38.14 1o2dA 371 40.50 e.22.1.2 86591 1v0lA 313 40.74 c.1.8.3 108207 2j01Q 141 40.80 2vfxA 206 42.94 2nyiA 195 43.22 1v0wA 506 43.66 d.136.1.2,d.136.1.2 108220,108221 1bu6O 501 43.96 c.55.1.4,c.55.1.4 33499,33500 2f5tX 233 45.48 1fh9A 312 45.60 c.1.8.3 28913 1lqaA 346 45.62 c.1.7.1 84674 2q62A 247 47.53 1gvhA 396 48.70 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2o0bA 450 48.76 2dskA 311 49.22 2hqbA 296 51.49 3brqA 296 52.83 8abpA 306 53.99 c.93.1.1 35647 1i5gA 144 54.73 c.47.1.10 61784 1wxiA 275 54.99 c.26.2.1 121400 1ta3B 303 57.08 c.1.8.3 106732 1uf3A 228 57.17 d.159.1.6 99317 1clxA 347 58.24 c.1.8.3 28899 1vpvA 300 58.31 c.119.1.1 113975 1mdbA 539 59.52 e.23.1.1 79008 1qw9A 502 59.53 b.71.1.2,c.1.8.3 96466,96467 1bykA 255 59.58 c.93.1.1 35706 1ecpA 238 59.58 c.56.2.1 33775 2gqwA 408 60.91 2q8uA 336 60.93 2ho3A 325 61.04 2hejA 323 61.30 1xzoA 174 61.63 c.47.1.10 122474 1exbA 332 63.70 c.1.7.1 28666 1qh8A 478 64.00 c.92.2.3 35633 1jubA 311 64.32 c.1.4.1 90908 2cxyA 125 64.54 1vm7A 311 64.71 c.72.1.1 108884 2g2cA 167 64.97 c.57.1.1 134535 1vi9A 299 65.11 c.72.1.5 100750 2p3rA 510 65.44 c.55.1.4,c.55.1.4 139471,139472 2f48A 555 65.51 c.89.1.1 132915 3d0kA 304 67.78 2r8wA 332 68.26 1vicA 262 70.01 c.68.1.13 100756 2csuA 457 71.60 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1btkA 169 72.21 b.55.1.1 26959 2gwhA 298 72.61 2rgyA 290 74.48 1n82A 331 75.13 c.1.8.3 91703 1ekeA 230 75.33 c.55.3.1 33572 1pfkA 320 76.86 c.89.1.1 35575 1st9A 143 78.71 c.47.1.10 98987 2depA 356 79.36 3bl6A 230 79.46 2glfA 450 79.62 1jaeA 471 80.05 b.71.1.1,c.1.8.1 27773,28760 1wa3A 205 80.99 c.1.10.1 120802 2h30A 164 81.54 2higA 487 82.81 2bfgA 503 83.19 b.71.1.2,c.1.8.3 128423,128424 1lci 550 83.24 1frb 315 84.23 1gz0A 253 84.42 c.116.1.1,d.79.3.3 76391,76392 1ezwA 349 84.48 c.1.16.3 29558 1m7xA 617 86.77 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1kvkA 395 88.34 d.14.1.5,d.58.26.3 73060,73061 2rjoA 332 88.35 1tlfA 301 88.50 c.93.1.1 35687 2qu7A 288 88.51 2h3hA 313 88.66 2pt0A 340 89.32 1ujpA 271 89.32 c.1.2.4 99462 1xw2A 405 89.46 a.102.1.2 122389 2v5xA 388 89.55 1ra6A 461 89.68 e.8.1.4 104879