Best Alignments for T0480

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2ausB	4.5264e-01	2ausB/T0480-2ausB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2apoB	6.3604e-01	2apoB/T0480-2apoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.16.1
1rlyA	7.8558e-01	1rlyA/T0480-1rlyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.3.1
2ct7A	8.5386e-01	2ct7A/T0480-2ct7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.44.1.4
2e72A	1.4935e+00	2e72A/T0480-2e72A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vk6A	2.7854e+00	1vk6A/T0480-1vk6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.113.1.4 d.113.1.4 g.41.14.1
1q33A	4.3092e+00	1q33A/T0480-1q33A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.113.1.1
2bmoA	6.5789e+00	2bmoA/T0480-2bmoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.33.1.2 d.129.3.3
1twfL	6.8849e+00	1twfL/T0480-1twfL-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.9.2
2gbwA	9.2392e+00	2gbwA/T0480-2gbwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rfkB	9.7374e+00	2rfkB/T0480-2rfkB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ltlA	1.0456e+01	1ltlA/T0480-1ltlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.4.11
1dl6A	1.0912e+01	1dl6A/T0480-1dl6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.3.1
1uliA	1.1080e+01	1uliA/T0480-1uliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.33.1.2 d.129.3.3
2ckfA	1.1160e+01	2ckfA/T0480-2ckfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n0zA	1.1684e+01	1n0zA/T0480-1n0zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.11.1
1o7nA	1.3192e+01	1o7nA/T0480-1o7nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.33.1.2 d.129.3.3
1z02A	1.3556e+01	1z02A/T0480-1z02A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2b1xA	1.3949e+01	2b1xA/T0480-2b1xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.33.1.2 d.129.3.3
1fqtA	1.6741e+01	1fqtA/T0480-1fqtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.33.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001