Best Alignments for T0480

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1rlyA	1.5731e-01	1rlyA/T0480-1rlyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.3.1
1jj2Z	2.0514e-01	1jj2Z/T0480-1jj2Z-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.2
1ffkW	6.0011e-01	1ffkW/T0480-1ffkW-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
2e72A	6.8131e-01	2e72A/T0480-2e72A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jj2Y	6.8755e-01	1jj2Y/T0480-1jj2Y-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1
1dl6A	6.8904e-01	1dl6A/T0480-1dl6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.3.1
1vk6A	7.2740e-01	1vk6A/T0480-1vk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.113.1.4 d.113.1.4 g.41.14.1
3cngA	9.2448e-01	3cngA/T0480-3cngA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2apoB	1.1430e+00	2apoB/T0480-2apoB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.16.1
2qjtA	1.5337e+00	2qjtA/T0480-2qjtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ausB	1.6683e+00	2ausB/T0480-2ausB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ct7A	1.9086e+00	2ct7A/T0480-2ct7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.44.1.4
2rfkB	1.9562e+00	2rfkB/T0480-2rfkB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n0zA	3.5677e+00	1n0zA/T0480-1n0zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.11.1
1vqo1	4.0281e+00	1vqo1/T0480-1vqo1-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bk3C	5.1444e+00	3bk3C/T0480-3bk3C-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lv3A	5.1624e+00	1lv3A/T0480-1lv3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.9
2hf1A	5.2918e+00	2hf1A/T0480-2hf1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j015	5.5006e+00	2j015/T0480-2j015-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s72Z	6.3753e+00	1s72Z/T0480-1s72Z-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.41.8.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001