# List of top-scoring protein chains for T0480.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2zkr2	97	1.929		
1pftA	50	2.833	g.41.3.1	45206
1ffkW	73	3.856	g.41.8.1	45315
1jj2Y	73	4.198	g.41.8.1	63110
2hf3A	374	14.79	c.55.1.1,c.55.1.1	136373,136374
1pvmA	184	14.99	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1r9wA	145	15.22	d.89.1.2	97264
1n0zA	45	15.34	g.41.11.1	85247
3cngA	189	15.50		
1zinA	217	16.80	c.37.1.1,g.41.2.1	31915,45178
2qh1A	198	16.95		
1w6uA	302	18.75	c.2.1.2	114288
2btfA	374	20.16	c.55.1.1,c.55.1.1	33429,33430
2oanA	375	20.33		
3cc2Z	116	21.57		
2aqcA	63	21.96	g.41.16.1	127177
2qa4Z	92	22.20		
1s72Z	73	22.59	g.41.8.1	105345
1vqoZ	83	22.66	g.41.8.1	120387
2apoB	60	24.16	g.41.16.1	127135
2e72A	49	24.18		
2em5A	46	26.77		
1meyC	87	33.72	k.12.1.1	46430
1hk8A	605	36.44	c.7.1.3	83540
1zt2A	330	38.44	d.264.1.1	125624
2ytsA	46	38.51		
1vk6A	269	39.24	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2j01Y	110	40.28		
3bczA	293	40.82		
1wgeA	83	47.05	g.41.17.1	120972
1lv3A	68	48.07	g.39.1.9	78231
1v74B	87	48.30	a.24.20.1	100443
1tfkB	91	48.88	a.24.20.1	119232
1sq4A	278	49.97	b.82.1.11	98962
2ba1A	179	50.49		
1qypA	57	52.58	g.41.3.1	45205
2osbA	216	56.05		
1p3jA	217	56.94	c.37.1.1,g.41.2.1	94022,94023
2p3sA	217	57.69		
2eu8A	216	57.73		
2qajA	217	58.07		
2oriA	216	58.18		
2oo7A	217	58.26		
1ul5A	88	59.09	g.72.1.1	99539
1v9pA	584	59.58	a.60.2.2,b.40.4.6,d.142.2.2	100544,100545,100546
1pqvS	309	60.04	i.8.1.1	95040
1y1vS	179	66.66	i.8.1.1	116361
1zxtA	76	67.81		
2vl6A	268	73.74		
2o13A	58	74.83		
2rfkB	53	77.62		
1azsA	220	77.89	d.58.29.1	39416
1culA	217	79.67	d.58.29.1	39417
1beiA	35	79.87	g.19.1.1	44877
1cs4A	225	81.32	d.58.29.1	39418
2k2pA	85	82.33		
1dgsA	667	84.49	a.60.2.2,b.40.4.6,d.142.2.2	17963,25365,41581
1jd5A	124	86.08	g.52.1.1	66544
2cu8A	76	86.70	g.39.1.3,g.39.1.3	130806,130807
1imlA	76	87.84	g.39.1.3,g.39.1.3	45145,45146