# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rlyA 60 0.03835 g.41.3.1 104988 1ffkW 73 0.04796 g.41.8.1 45315 1jj2Y 73 0.05217 g.41.8.1 63110 3cngA 189 0.1515 1jj2Z 56 0.2080 g.41.8.2 63111 1dl6A 58 0.3282 g.41.3.1 45207 2apoB 60 0.4896 g.41.16.1 127135 2ct7A 86 1.258 g.44.1.4 130791 1vk6A 269 1.405 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2gnrA 145 1.546 2j015 60 1.735 2ausB 60 1.745 2rfkB 53 1.809 1n0zA 45 2.247 g.41.11.1 85247 2e72A 49 2.262 1ltlA 279 2.336 b.40.4.11 84701 1v54F 98 2.408 g.41.5.3 100327 2occF 98 2.509 g.41.5.3 45256 2riqA 160 2.677 1tiyA 164 2.816 c.97.1.2 107012 2bh0A 208 2.877 3c0dA 119 2.909 1s72Z 73 3.212 g.41.8.1 105345 1ptqA 50 3.615 g.49.1.1 45349 1uaqA 158 3.668 c.97.1.2 88386 1wdxA 69 3.683 2qjtA 352 3.707 2gbwA 454 3.835 3bk3C 67 4.108 2bmoA 447 5.104 b.33.1.2,d.129.3.3 128804,128805 1z3aA 168 5.237 c.97.1.2 124396 3c7bA 417 5.493 2a8nA 144 5.500 c.97.1.2 126408 1wkqA 164 5.679 c.97.1.2 109393 2ckfA 454 5.707 1beiA 35 5.964 g.19.1.1 44877 1lv3A 68 6.131 g.39.1.9 78231 1wwrA 171 6.378 c.97.1.2 121366 1p91A 269 6.500 c.66.1.33 94378 1h0hA 977 7.693 b.52.2.2,c.81.1.1 76435,76436 1g8kA 825 7.958 b.52.2.2,c.81.1.1 26920,35328 1eu1A 780 8.263 b.52.2.2,c.81.1.1 26903,35311 2cttA 104 8.729 2nx8A 179 8.752 1kqfA 1015 8.812 b.52.2.2,c.81.1.1 72871,72872 2b3jA 159 8.846 c.97.1.2 127787 1twfI 122 8.968 g.41.3.1,g.41.3.1 112733,112734 1yo8A 634 9.027 1iroA 54 9.233 g.41.5.1 45223 2ctdA 96 9.333 g.37.1.1,g.37.1.1 130792,130793 1m2kA 249 9.469 c.31.1.5 84754 1jocA 125 9.586 g.50.1.1,h.1.21.1 66990,66991 2pvxA 54 9.654 1dsvA 31 9.709 g.40.1.1 45174 1ptq 50 9.739 6rxnA 45 9.830 g.41.5.1 45222 1shyB 551 9.838 b.69.12.1,g.16.2.1 105565,105566 1yc5A 246 9.901 c.31.1.5 122910 1ma3A 253 9.903 c.31.1.5 78883 2b5lC 222 10.31 1g8jA 825 10.48 b.52.2.2,c.81.1.1 26924,35332 1cl4A 60 10.53 g.40.1.1 45171 2b1xA 470 10.81 b.33.1.2,d.129.3.3 127675,127676 1yk4A 52 10.89 2conA 79 10.92 g.41.15.1 130680 2fmlA 273 11.00 a.4.5.68,d.113.1.6 133778,133779 2jo6A 113 11.20 1dgsA 667 11.22 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 2dsxA 52 11.43 g.41.5.1 131699 1uliA 460 11.74 b.33.1.2,d.129.3.3 107921,107922 3c7bB 366 11.75 1iciA 256 11.86 c.31.1.5 62266 2pveA 54 12.10 1rb9A 52 12.42 g.41.5.1 45214 1s5aA 150 12.93 d.17.4.10 98525 1b2oA 54 13.18 g.41.5.1 45233 1b2jA 54 13.42 g.41.5.1 45231 1b13A 54 13.53 g.41.5.1 45227 1eg9A 449 14.21 b.33.1.2,d.129.3.3 24443,41322 1ltsA 185 14.34 d.166.1.1 42229 1vqoZ 83 14.37 g.41.8.1 120387 1p6oA 161 14.52 c.97.1.2 94185 1brfA 53 14.56 g.41.5.1 45236 1xm0A 147 14.74 b.88.1.3 122140 1b71A 191 14.82 a.25.1.1,g.41.5.1 16647,45246 1vm9A 111 14.93 b.33.1.1 108886 2fiyA 309 15.03 e.59.1.1 133540 1qw2A 102 15.08 d.249.1.1 96456 4gatA 66 15.20 g.39.1.1 45100 1bq8A 54 15.51 g.41.5.1 45237 1bq9A 54 15.57 g.41.5.1 45238 1sjgA 112 15.59 b.33.1.1 105647 2nutA 769 15.85 1ajj 37 16.27 1sl4A 155 16.65 d.169.1.1 105710 2csbA 519 16.76 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1rb9 53 17.03 2hf1A 68 17.07 1dx8A 70 17.10 g.41.5.1 45243 1icwA 72 17.11 d.9.1.1 37357 7fd1A 106 17.66 d.58.1.2 38953 2pmzP 48 17.73 1l3yA 41 18.24 g.3.11.6 73558 1j8eA 44 18.30 g.12.1.1 66437 2hr7A 486 19.67 1h98A 78 20.01 d.58.1.2 65743 1mfwA 107 20.21 d.15.11.1 84940 1vq2A 193 20.63 c.97.1.2 114004 2g84A 197 20.75 c.97.1.2 134766 1x6mA 196 20.86 b.88.1.4 114920 1q1aA 289 21.38 c.31.1.5 95561 2de6A 392 22.07 b.33.1.2,d.129.3.3 131415,131416 2i5oA 39 22.18 2napA 723 22.41 b.52.2.2,c.81.1.1 26926,35334 1ro5A 201 22.96 d.108.1.3 105023 1f5yA 85 23.01 g.12.1.1,g.12.1.1 44610,44611 2bngA 149 23.03 2qjoA 341 23.21 1b0tA 106 23.56 d.58.1.2 38965 1ndoA 449 23.86 b.33.1.2,d.129.3.3 24444,41323 2e4qA 109 24.35 1vfyA 73 25.14 g.50.1.1 45357 2hldG 278 25.27 1gntA 553 25.46 e.26.1.1 70290 2j01V 101 25.83 1z02A 446 26.04 1y7wA 291 26.33 1y5iA 1246 26.36 b.52.2.2,c.81.1.1 122639,122640 1q16A 1247 27.10 b.52.2.2,c.81.1.1 95546,95547 2atrA 138 27.29 d.108.1.1 127305 1ajjA 37 27.33 g.12.1.1 44609 1fljA 260 27.70 b.74.1.1 27954 1kzfA 230 27.75 d.108.1.3 73354 1wd2A 60 27.78 g.44.1.1 109232 1lugA 259 29.41 b.74.1.1 91127 2fcwB 80 29.42 g.12.1.1,g.12.1.1 133289,133290 2e7zA 727 29.43 1ryt 190 30.79 3bm4A 210 32.16 1dvpA 220 32.20 a.118.9.2,g.50.1.1 19216,45358 1lkoA 191 32.29 a.25.1.1,g.41.5.1 78063,78064 1h8eG 272 32.31 c.49.2.1 60756 2i13A 190 32.55 k.12.1.1 136964 2d8qA 70 33.50 g.85.1.1 131335 1fr7A 260 33.54 b.74.1.1 27828 1boeA 47 34.07 g.3.9.1 44187 2jmoA 80 34.29 1g38A 393 35.12 c.66.1.27,d.287.1.1 111567,111568 1ykfA 352 35.62 b.35.1.2,c.2.1.1 24757,29773 1jhdA 396 35.82 b.122.1.3,c.26.1.5 66712,66713 1s5pA 235 36.46 c.31.1.5 98569 1vqo3 92 36.99 1lml 478 37.17 2v3vA 723 37.20 1zncA 266 37.49 b.74.1.1 27955 1plfA 72 38.06 d.9.1.1 37373 2hjhA 354 38.26 2oap1 511 38.71 1gh9A 71 38.99 g.41.6.1 45266 1jd0A 263 39.53 b.74.1.1 62888 2bs2B 241 39.75 a.1.2.1,d.15.4.2 129033,129034 1jjdA 55 40.18 g.46.1.1 63116 1ryqA 69 40.19 g.41.9.3 105126 1p3y1 194 40.56 2hvwA 184 40.57 1xpaA 122 40.64 a.6.1.2,g.39.1.5 16308,45151 2ih2A 421 41.39 1irxA 523 41.59 a.97.1.2,c.26.1.1 71378,71379 1wjnA 97 41.95 d.15.1.1 114703 2orwA 184 41.99 1hdlA 55 42.06 g.68.1.2 65808 1lt3A 240 42.57 d.166.1.1 42230 1p90A 145 43.31 c.55.5.2 94377 1yo1A 260 43.51 1gaxA 862 43.76 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1pedA 351 44.64 b.35.1.2,c.2.1.1 24753,29769 1keqA 248 44.96 b.74.1.1 72387 2baiA 32 45.15 g.87.1.1 128237 1npoA 95 45.27 b.9.1.1 23270 1e79G 272 45.58 c.49.2.1 33158 2fdn 55 45.76 2nmxA 260 46.42 b.74.1.1 138382 1pl8A 356 46.91 b.35.1.2,c.2.1.1 94878,94879 3c5kA 109 47.01 2h88B 252 48.10 1npoC 95 48.55 b.9.1.1 23271 1mzbA 136 48.66 a.4.5.42 91497 2gatA 66 48.81 g.39.1.1 45102 1x3zA 335 49.44 d.3.1.4 121673 1zoyB 252 49.70 1cr8A 42 49.85 g.12.1.1 44613 2ivfB 352 50.08 2g45A 129 51.36 1mmcA 30 51.40 g.3.1.2 44061 2pg3A 232 51.48 2fbwB 252 52.10 1e3jA 352 52.14 b.35.1.2,c.2.1.1 24765,29781 1g0sA 209 52.20 d.113.1.1 60187 2cdcA 366 52.20 2fkiA 126 52.54 d.198.3.1 133657 2bx9A 53 53.33 2eppA 66 53.71 2vpzA 765 53.75 1mgsA 73 53.97 d.9.1.1 37389 2ba1A 179 53.99 2b4yA 271 54.06 c.31.1.5 127868 2olmA 140 54.11 1jqbA 351 54.76 b.35.1.2,c.2.1.1 77151,77152 1u5mA 73 55.06 g.27.1.2 113043 1wqkA 42 55.58 2iafA 151 56.09 d.81.2.1 137157 2iqjA 134 56.42 1jvbA 347 57.02 b.35.1.2,c.2.1.1 77181,77182 1tuhA 156 57.03 d.17.4.11 107345 2owaA 138 57.48 1vhzA 198 59.52 d.113.1.1 100718 1xbtA 193 59.61 c.37.1.24,g.39.1.14 115080,115081 2qkdA 404 59.74 1vqo1 57 59.95 1a15A 67 60.06 d.9.1.1 37451 2v2kA 105 60.39 1g7eA 122 60.50 c.47.1.7 33055 2ozhA 142 60.51 2hfxA 260 60.85 2p57A 144 61.72 1l8dA 112 62.50 h.4.12.1 73687 1kevA 351 62.96 b.35.1.2,c.2.1.1 24749,29765 1kbeA 49 63.08 g.49.1.1 68380 2bn2A 95 63.72 b.9.1.1 23266 1hyiA 65 65.11 g.50.1.1 61406 2cjsC 62 65.19 1kolA 398 65.28 b.35.1.2,c.2.1.1 77474,77475 2vil 126 65.32 2fs2A 151 65.66 d.38.1.5 134003 1l5cA 92 66.33 b.9.1.1 73577 2jrrA 67 66.36 1p0fA 373 67.27 b.35.1.2,c.2.1.1 87642,87643 1jy2P 48 67.78 h.1.8.1 67442 1r4yA 136 67.80 d.1.1.3 97056 1u5kA 244 68.79 b.40.4.13,g.45.1.2 113038,113039 1de3A 150 69.47 d.1.1.3 36240 1vj0A 380 70.02 b.35.1.2,c.2.1.1 100786,100787 2cy9A 140 70.04 d.38.1.5 131019 2ck3G 272 70.55 c.49.2.1 130562 1erdA 40 70.70 a.10.1.1 16362 2gliA 160 70.74 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1l1dA 152 71.03 b.88.1.3 73452 1n71A 180 71.29 d.108.1.1 85370 1y8qB 640 71.44 1wyxA 69 72.38 1gatA 60 72.79 g.39.1.1 45106 1qorA 327 74.33 b.35.1.2,c.2.1.1 24766,29782 2aqaA 63 74.63 g.41.16.1 127168 1b8sA 504 74.75 c.3.1.2,d.16.1.1 30335,37866 2j6aA 141 75.23 1yukB 120 75.73 1w4rA 195 75.88 1adwA 123 75.93 b.6.1.1 22893 1th5A 74 75.97 d.52.8.1 119263 1k82A 268 76.40 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2gmgA 105 76.43 2b5wA 357 78.27 2jdiG 273 78.67 c.49.2.1 138272 1fqtA 112 78.77 b.33.1.1 24441 2i7fA 108 79.22 1u3wA 374 80.65 b.35.1.2,c.2.1.1 113013,113014 1ug1A 92 81.57 b.34.2.1 99360 2d8aA 348 82.20 1g73C 121 82.33 g.52.1.1 45375 1q98A 165 84.53 c.47.1.10 96253 1wo3A 25 84.81 1w4sA 174 84.85 1p9gA 41 85.80 g.3.1.1 104091 1nwwA 149 85.85 d.17.4.8 86306 2pspA 106 86.06 g.16.1.1,g.16.1.1 44730,44731 2nswA 60 86.52 1k8kC 372 88.68 b.69.4.1 68308 2v0cA 878 89.02 1ee8A 266 89.62 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1wo7A 25 89.75