# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.08824 g.41.8.1 45315 1rlyA 60 0.1205 g.41.3.1 104988 1jj2Y 73 0.1220 g.41.8.1 63110 3cngA 189 0.2317 1jj2Z 56 0.4121 g.41.8.2 63111 1dl6A 58 0.6075 g.41.3.1 45207 2apoB 60 0.6412 g.41.16.1 127135 2ct7A 86 1.539 g.44.1.4 130791 2qjtA 352 1.614 3c0dA 119 1.697 1vk6A 269 2.011 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2rfkB 53 2.562 2ausB 60 2.827 1ltlA 279 2.874 b.40.4.11 84701 2gnrA 145 2.961 2e72A 49 2.961 1uaqA 158 3.035 c.97.1.2 88386 2j015 60 3.136 1n0zA 45 3.165 g.41.11.1 85247 1z3aA 168 3.507 c.97.1.2 124396 1ptqA 50 3.522 g.49.1.1 45349 2occF 98 3.675 g.41.5.3 45256 1shyB 551 3.835 b.69.12.1,g.16.2.1 105565,105566 2a8nA 144 3.988 c.97.1.2 126408 1v54F 98 4.011 g.41.5.3 100327 2riqA 160 4.094 1tiyA 164 4.137 c.97.1.2 107012 2fmlA 273 5.011 a.4.5.68,d.113.1.6 133778,133779 3bk3C 67 5.700 1wkqA 164 6.126 c.97.1.2 109393 1s72Z 73 6.283 g.41.8.1 105345 2gbwA 454 6.410 2bmoA 447 6.776 b.33.1.2,d.129.3.3 128804,128805 2bh0A 208 7.104 1ptq 50 8.109 2nx8A 179 8.184 2hf1A 68 8.598 2b3jA 159 8.627 c.97.1.2 127787 1wdxA 69 8.738 1vm9A 111 8.879 b.33.1.1 108886 1p6oA 161 9.065 c.97.1.2 94185 1lv3A 68 9.343 g.39.1.9 78231 1g8kA 825 9.387 b.52.2.2,c.81.1.1 26920,35328 1dsvA 31 10.26 g.40.1.1 45174 1s5aA 150 10.33 d.17.4.10 98525 1iroA 54 10.49 g.41.5.1 45223 2pvxA 54 10.69 6rxnA 45 10.94 g.41.5.1 45222 1kqfA 1015 11.22 b.52.2.2,c.81.1.1 72871,72872 1wwrA 171 11.24 c.97.1.2 121366 1h0hA 977 11.47 b.52.2.2,c.81.1.1 76435,76436 2ckfA 454 11.60 2ctdA 96 11.70 g.37.1.1,g.37.1.1 130792,130793 2cttA 104 11.94 1g8jA 825 12.16 b.52.2.2,c.81.1.1 26924,35332 1yk4A 52 12.18 3c7bB 366 12.45 1yo8A 634 12.56 2dsxA 52 13.17 g.41.5.1 131699 1p91A 269 13.21 c.66.1.33 94378 2qjoA 341 13.51 1z02A 446 13.68 2pveA 54 13.78 3c7bA 417 13.84 2de6A 392 13.94 b.33.1.2,d.129.3.3 131415,131416 1beiA 35 14.02 g.19.1.1 44877 1rb9A 52 14.33 g.41.5.1 45214 1b71A 191 14.36 a.25.1.1,g.41.5.1 16647,45246 1sjgA 112 14.37 b.33.1.1 105647 2b1xA 470 14.51 b.33.1.2,d.129.3.3 127675,127676 2g84A 197 14.57 c.97.1.2 134766 2b5lC 222 14.75 1eg9A 449 15.45 b.33.1.2,d.129.3.3 24443,41322 1j8eA 44 15.75 g.12.1.1 66437 1cl4A 60 15.83 g.40.1.1 45171 1b13A 54 16.16 g.41.5.1 45227 1b2jA 54 16.16 g.41.5.1 45231 1b2oA 54 16.22 g.41.5.1 45233 1g38A 393 16.34 c.66.1.27,d.287.1.1 111567,111568 2csbA 519 16.35 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1ro5A 201 16.39 d.108.1.3 105023 1uliA 460 16.44 b.33.1.2,d.129.3.3 107921,107922 1ma3A 253 16.49 c.31.1.5 78883 1yc5A 246 16.93 c.31.1.5 122910 1brfA 53 17.31 g.41.5.1 45236 1dgsA 667 17.42 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1jocA 125 17.59 g.50.1.1,h.1.21.1 66990,66991 1bq8A 54 17.99 g.41.5.1 45237 1bq9A 54 17.99 g.41.5.1 45238 1dx8A 70 18.34 g.41.5.1 45243 1rb9 53 19.52 2bngA 149 19.65 2jmoA 80 19.77 2ih2A 421 19.84 1vqoZ 83 20.13 g.41.8.1 120387 1gntA 553 20.58 e.26.1.1 70290 1xm0A 147 21.33 b.88.1.3 122140 1sl4A 155 21.85 d.169.1.1 105710 1kzfA 230 22.01 d.108.1.3 73354 1h98A 78 23.22 d.58.1.2 65743 1ndoA 449 23.27 b.33.1.2,d.129.3.3 24444,41323 2conA 79 23.29 g.41.15.1 130680 1m2kA 249 24.03 c.31.1.5 84754 1x6mA 196 24.21 b.88.1.4 114920 1vq2A 193 24.63 c.97.1.2 114004 2q3wA 111 25.04 b.33.1.1 139813 7fd1A 106 25.23 d.58.1.2 38953 1mfwA 107 25.41 d.15.11.1 84940 2fiyA 309 25.96 e.59.1.1 133540 1ajj 37 26.35 4gatA 66 26.39 g.39.1.1 45100 2e4qA 109 26.61 2hr7A 486 26.98 2i13A 190 27.05 k.12.1.1 136964 2nutA 769 27.89 2jo6A 113 30.33 1qw2A 102 30.85 d.249.1.1 96456 1gaxA 862 30.90 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2i5oA 39 30.90 1iciA 256 31.00 c.31.1.5 62266 2d8qA 70 31.02 g.85.1.1 131335 1l3yA 41 31.03 g.3.11.6 73558 1eu1A 780 31.36 b.52.2.2,c.81.1.1 26903,35311 1q1aA 289 31.95 c.31.1.5 95561 1twfI 122 32.89 g.41.3.1,g.41.3.1 112733,112734 1ltsA 185 33.67 d.166.1.1 42229 2fcwB 80 33.95 g.12.1.1,g.12.1.1 133289,133290 1wd2A 60 36.47 g.44.1.1 109232 1u5kA 244 37.91 b.40.4.13,g.45.1.2 113038,113039 1ajjA 37 38.30 g.12.1.1 44609 2atrA 138 39.33 d.108.1.1 127305 1ug1A 92 39.97 b.34.2.1 99360 1xpaA 122 40.14 a.6.1.2,g.39.1.5 16308,45151 1lkoA 191 40.26 a.25.1.1,g.41.5.1 78063,78064 1tuhA 156 40.75 d.17.4.11 107345 1ryt 190 42.07 1f5yA 85 42.69 g.12.1.1,g.12.1.1 44610,44611 2v2kA 105 43.34 1cr8A 42 43.39 g.12.1.1 44613 1nwwA 149 46.03 d.17.4.8 86306 2pmzP 48 46.05 1p90A 145 46.35 c.55.5.2 94377 1wqkA 42 46.61 1th5A 74 47.22 d.52.8.1 119263 1kte 105 48.05 1ryqA 69 49.26 g.41.9.3 105126 1wjnA 97 49.36 d.15.1.1 114703 2hvwA 184 49.46 1twfL 70 49.92 g.41.9.2 112737 2j01V 101 50.14 1lml 478 51.09 1u5mA 73 51.52 g.27.1.2 113043 2iqjA 134 52.36 2owaA 138 52.40 3c5kA 109 53.07 2gliA 160 53.22 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1lt3A 240 53.56 d.166.1.1 42230 3bm4A 210 54.05 2p57A 144 54.36 1mmcA 30 54.38 g.3.1.2 44061 2olmA 140 54.47 1s5pA 235 54.91 c.31.1.5 98569 1irxA 523 55.09 a.97.1.2,c.26.1.1 71378,71379 2g45A 129 55.25 1knwA 425 55.58 b.49.2.3,c.1.6.1 90969,90970 2cy9A 140 57.73 d.38.1.5 131019 1jy2P 48 58.14 h.1.8.1 67442 1mzbA 136 58.24 a.4.5.42 91497 2fs2A 151 58.53 d.38.1.5 134003 2ivfB 352 58.87 2gb4A 252 60.20 1k8kC 372 60.45 b.69.4.1 68308 1aqjA 421 60.82 c.66.1.27,d.287.1.1 111563,111564 1gh9A 71 61.74 g.41.6.1 45266 2ibtA 421 62.64 c.66.1.27,d.287.1.1 137205,137206 2bx9A 53 63.10 1o7nA 449 63.21 b.33.1.2,d.129.3.3 81162,81163 1ykfA 352 63.69 b.35.1.2,c.2.1.1 24757,29773 1e1dA 553 63.84 e.26.1.1 43363 1xbtA 193 64.19 c.37.1.24,g.39.1.14 115080,115081 1vfyA 73 64.78 g.50.1.1 45357 1fljA 260 65.83 b.74.1.1 27954 2f0xA 148 65.98 d.38.1.5 132673 2e7zA 727 67.09 2qkdA 404 67.57 2orwA 184 68.39 2fdn 55 68.53 1boeA 47 68.90 g.3.9.1 44187 2admA 421 69.71 c.66.1.27,d.287.1.1 111611,111612 1b0tA 106 69.94 d.58.1.2 38965 1l8dA 112 70.59 h.4.12.1 73687 2gatA 66 71.15 g.39.1.1 45102 2jvmA 80 71.41 1fqtA 112 71.52 b.33.1.1 24441 1l1dA 152 72.48 b.88.1.3 73452 2f8lA 344 72.57 c.66.1.45 133132 2eppA 66 73.51 1wo6A 25 73.63 1vqo1 57 73.69 2ba1A 179 74.27 1q16A 1247 74.49 b.52.2.2,c.81.1.1 95546,95547 2volB 180 74.68 1vhzA 198 75.46 d.113.1.1 100718 1wo3A 25 75.48 2jrrA 67 76.06 1pedA 351 77.41 b.35.1.2,c.2.1.1 24753,29769 1vqo3 92 77.88 2baiA 32 78.86 g.87.1.1 128237 2aqaA 63 78.94 g.41.16.1 127168 1zoyB 252 78.99 1fr7A 260 79.26 b.74.1.1 27828 1jjdA 55 79.77 g.46.1.1 63116 2h88B 252 80.84 1lugA 259 81.65 b.74.1.1 91127 2hjhA 354 81.66 2iwgB 181 81.85 1t44G 147 83.37 d.109.1.1 106395 2gmgA 105 85.43 1g73C 121 85.56 g.52.1.1 45375 2hldG 278 86.46 1bpoA 494 87.05 a.118.1.4,b.69.6.1 19143,27670 1zntA 31 87.10 1kbeA 49 87.87 g.49.1.1 68380 1w4rA 195 88.05 1hyiA 65 88.38 g.50.1.1 61406 1h7xA 1025 88.46 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1zbdB 134 89.53 g.50.1.1 45359 1p3y1 194 89.95 1zncA 266 89.98 b.74.1.1 27955