# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jj2Y 73 0.08237 g.41.8.1 63110 1ffkW 73 0.1031 g.41.8.1 45315 1rlyA 60 0.1818 g.41.3.1 104988 3cngA 189 0.2374 1jj2Z 56 0.4418 g.41.8.2 63111 1dl6A 58 0.7615 g.41.3.1 45207 2apoB 60 0.7888 g.41.16.1 127135 2qjtA 352 1.324 1tiyA 164 1.663 c.97.1.2 107012 2a8nA 144 1.822 c.97.1.2 126408 2ct7A 86 1.955 g.44.1.4 130791 1z3aA 168 2.050 c.97.1.2 124396 1ltlA 279 2.206 b.40.4.11 84701 1wkqA 164 2.242 c.97.1.2 109393 2ausB 60 2.289 1ptqA 50 2.658 g.49.1.1 45349 2gbwA 454 2.686 2riqA 160 2.900 1vk6A 269 2.914 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2e72A 49 2.947 2gnrA 145 3.023 1s72Z 73 3.024 g.41.8.1 105345 3c0dA 119 3.189 2bmoA 447 3.217 b.33.1.2,d.129.3.3 128804,128805 2nx8A 179 3.430 1wwrA 171 3.509 c.97.1.2 121366 1n0zA 45 3.710 g.41.11.1 85247 1v54F 98 3.736 g.41.5.3 100327 2b3jA 159 4.556 c.97.1.2 127787 1s5aA 150 4.708 d.17.4.10 98525 2rfkB 53 4.723 2ckfA 454 4.828 2j015 60 5.483 2hvwA 184 5.561 1ptq 50 6.337 1vhzA 198 6.381 d.113.1.1 100718 2hf1A 68 6.510 2fmlA 273 6.880 a.4.5.68,d.113.1.6 133778,133779 1uaqA 158 6.929 c.97.1.2 88386 3c7bA 417 6.982 2bngA 149 7.032 1kqfA 1015 7.178 b.52.2.2,c.81.1.1 72871,72872 1wdxA 69 7.298 2b1xA 470 7.313 b.33.1.2,d.129.3.3 127675,127676 1uliA 460 8.007 b.33.1.2,d.129.3.3 107921,107922 2e4qA 109 8.104 1eg9A 449 8.370 b.33.1.2,d.129.3.3 24443,41322 1beiA 35 8.422 g.19.1.1 44877 1lv3A 68 8.489 g.39.1.9 78231 1dsvA 31 9.311 g.40.1.1 45174 1iroA 54 9.350 g.41.5.1 45223 1g8kA 825 9.483 b.52.2.2,c.81.1.1 26920,35328 2ih2A 421 9.559 2qjoA 341 9.97 2pvxA 54 9.98 1vq2A 193 10.33 c.97.1.2 114004 2occF 98 10.40 g.41.5.3 45256 1rb9A 52 10.88 g.41.5.1 45214 1j8eA 44 10.96 g.12.1.1 66437 2de6A 392 11.06 b.33.1.2,d.129.3.3 131415,131416 1sl4A 155 11.34 d.169.1.1 105710 1g38A 393 11.36 c.66.1.27,d.287.1.1 111567,111568 1yk4A 52 11.54 2ctdA 96 11.68 g.37.1.1,g.37.1.1 130792,130793 6rxnA 45 11.85 g.41.5.1 45222 2pveA 54 12.18 1eu1A 780 12.22 b.52.2.2,c.81.1.1 26903,35311 1z02A 446 12.25 3bk3C 67 12.84 2dsxA 52 12.86 g.41.5.1 131699 2cy9A 140 12.92 d.38.1.5 131019 1h0hA 977 13.04 b.52.2.2,c.81.1.1 76435,76436 1g8jA 825 13.11 b.52.2.2,c.81.1.1 26924,35332 1ltsA 185 13.14 d.166.1.1 42229 2conA 79 13.37 g.41.15.1 130680 2nutA 769 13.49 1p91A 269 13.63 c.66.1.33 94378 1yc5A 246 13.74 c.31.1.5 122910 2g84A 197 13.79 c.97.1.2 134766 1brfA 53 13.82 g.41.5.1 45236 1b2oA 54 14.04 g.41.5.1 45233 1b2jA 54 14.15 g.41.5.1 45231 1b13A 54 14.19 g.41.5.1 45227 1bq8A 54 14.57 g.41.5.1 45237 1bq9A 54 14.61 g.41.5.1 45238 1iciA 256 14.74 c.31.1.5 62266 1ndoA 449 15.19 b.33.1.2,d.129.3.3 24444,41323 1p6oA 161 15.70 c.97.1.2 94185 1rb9 53 15.97 4gatA 66 16.04 g.39.1.1 45100 1yfuA 174 16.25 b.82.1.20 123094 1dx8A 70 16.28 g.41.5.1 45243 1vqoZ 83 16.69 g.41.8.1 120387 1ma3A 253 17.21 c.31.1.5 78883 1tuhA 156 17.26 d.17.4.11 107345 1f5yA 85 17.39 g.12.1.1,g.12.1.1 44610,44611 2fkiA 126 17.39 d.198.3.1 133657 1dgsA 667 19.11 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1b71A 191 19.16 a.25.1.1,g.41.5.1 16647,45246 2fcwB 80 19.21 g.12.1.1,g.12.1.1 133289,133290 1jocA 125 19.53 g.50.1.1,h.1.21.1 66990,66991 1cl4A 60 19.63 g.40.1.1 45171 1ajj 37 19.65 1ro5A 201 19.77 d.108.1.3 105023 1l1dA 152 20.10 b.88.1.3 73452 1x6mA 196 20.52 b.88.1.4 114920 1shyB 551 20.97 b.69.12.1,g.16.2.1 105565,105566 2cttA 104 21.20 1wd2A 60 21.24 g.44.1.1 109232 2jmoA 80 21.44 2fiyA 309 21.75 e.59.1.1 133540 1nwwA 149 22.04 d.17.4.8 86306 2csbA 519 22.26 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 2e7zA 727 22.55 2i13A 190 22.66 k.12.1.1 136964 2d8qA 70 23.34 g.85.1.1 131335 1m2kA 249 24.03 c.31.1.5 84754 1xpaA 122 24.55 a.6.1.2,g.39.1.5 16308,45151 1yo8A 634 24.59 2bs6A 90 25.21 1ajjA 37 25.66 g.12.1.1 44609 1fqtA 112 25.76 b.33.1.1 24441 2ibtA 421 26.13 c.66.1.27,d.287.1.1 137205,137206 1q1aA 289 26.14 c.31.1.5 95561 1ryqA 69 27.49 g.41.9.3 105126 2jrpA 81 27.70 1kzfA 230 28.49 d.108.1.3 73354 1cr8A 42 29.09 g.12.1.1 44613 1vm9A 111 29.36 b.33.1.1 108886 1y5iA 1246 29.53 b.52.2.2,c.81.1.1 122639,122640 2vpzA 765 29.56 2v3vA 723 30.32 1wjnA 97 30.42 d.15.1.1 114703 1q16A 1247 30.95 b.52.2.2,c.81.1.1 95546,95547 2i5oA 39 31.42 1q98A 165 31.85 c.47.1.10 96253 1gaxA 862 31.86 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2bh0A 208 32.38 1l3yA 41 32.48 g.3.11.6 73558 2napA 723 33.78 b.52.2.2,c.81.1.1 26926,35334 2i7fA 108 33.80 1gntA 553 34.85 e.26.1.1 70290 1irxA 523 35.52 a.97.1.2,c.26.1.1 71378,71379 1mzbA 136 35.83 a.4.5.42 91497 1kte 105 36.25 1o7nA 449 36.27 b.33.1.2,d.129.3.3 81162,81163 2vil 126 36.62 2jo6A 113 36.89 1aqjA 421 37.46 c.66.1.27,d.287.1.1 111563,111564 1x3xA 82 38.41 1eo1A 124 38.42 c.55.5.1 33739 1o13A 136 38.63 c.55.5.1 80762 2f8lA 344 39.40 c.66.1.45 133132 3c5kA 109 40.01 1wyxA 69 40.88 1vqo3 92 41.35 2admA 421 41.85 c.66.1.27,d.287.1.1 111611,111612 1ee8A 266 42.03 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2hldG 278 42.54 1xakA 83 43.10 b.1.24.1 115037 2agkA 260 43.34 2iv2X 715 43.48 b.52.2.2,c.81.1.1 137714,137715 2qkdA 404 43.56 1s5pA 235 43.91 c.31.1.5 98569 1lkoA 191 46.95 a.25.1.1,g.41.5.1 78063,78064 1eueA 86 47.06 d.120.1.1 59504 1ayoA 130 47.10 b.2.4.1 22431 1nykA 165 47.38 b.33.1.1 86408 1hdlA 55 47.60 g.68.1.2 65808 1sjwA 144 47.96 d.17.4.9 98899 1k82A 268 47.99 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2gb4A 252 48.82 1d4xG 126 48.86 d.109.1.1 59109 1ryt 190 49.75 2ba1A 179 51.23 2i00A 406 51.64 1awpA 92 51.71 d.120.1.1 41071 1gh9A 71 51.83 g.41.6.1 45266 1lt3A 240 53.75 d.166.1.1 42230 2ivfB 352 54.51 1k3xA 262 54.86 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1l8dA 112 55.85 h.4.12.1 73687 1ug1A 92 55.94 b.34.2.1 99360 2gatA 66 56.02 g.39.1.1 45102 2fs2A 151 56.83 d.38.1.5 134003 1b8sA 504 57.45 c.3.1.2,d.16.1.1 30335,37866 2ibjA 88 57.61 1l1zA 274 57.92 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1u5mA 73 58.43 g.27.1.2 113043 1jy2P 48 58.48 h.1.8.1 67442 1x6vA 630 58.97 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pmzP 48 59.26 1cyoA 93 59.48 d.120.1.1 41065 3cxkA 164 59.53 1zkiA 133 59.66 d.38.1.5 125199 1cxyA 90 59.77 d.120.1.1 41085 1v8yA 170 60.86 d.113.1.1 113581 1frvB 536 61.36 e.18.1.1 43296 2bx9A 53 62.57 3c7bB 366 62.90 2b5lC 222 63.25 1sjgA 112 63.41 b.33.1.1 105647 1lqxA 82 63.57 d.120.1.1 78153 2g45A 129 63.79 2k0qA 74 64.22 2hv2A 400 64.90 2eppA 66 64.90 2geyA 158 65.20 2yvpA 182 66.49 1xm0A 147 67.12 b.88.1.3 122140 1x3zA 335 68.36 d.3.1.4 121673 1lvoA 302 68.48 b.47.1.4 74284 1afpA 51 69.09 g.26.1.1 44947 1obpA 159 69.41 b.60.1.1 27092 1qxfA 66 69.76 g.41.8.4 96527 1t44G 147 69.81 d.109.1.1 106395 1lj0A 92 71.00 d.120.1.1 78019 2f0xA 148 71.21 d.38.1.5 132673 2o1qA 145 71.46 2aqaA 63 72.18 g.41.16.1 127168 1wuiL 534 72.71 e.18.1.1 121289 2jrrA 67 75.42 1p0fA 373 76.06 b.35.1.2,c.2.1.1 87642,87643 1pq7A 224 76.48 b.47.1.2 95002 1lml 478 76.62 1sdwA 314 76.63 b.121.1.2,b.121.1.2 98810,98811 2orwA 184 77.14 1dsqA 21 77.55 g.40.1.1 45173 1h98A 78 77.55 d.58.1.2 65743 1u5kA 244 78.12 b.40.4.13,g.45.1.2 113038,113039 2jroA 78 78.70 1e3dB 542 78.79 e.18.1.1 59189 1zntA 31 81.15 1gatA 60 81.62 g.39.1.1 45106 2r0lB 35 83.48 1jjdA 55 84.72 g.46.1.1 63116 1th5A 74 85.67 d.52.8.1 119263 1vfyA 73 86.34 g.50.1.1 45357 1pmlA 86 87.47 g.14.1.1 44632 2cdcA 366 87.52 1cyo 93 88.43 1mmcA 30 89.68 g.3.1.2 44061 2okcA 445 89.74