# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.03971 g.41.8.1 45315 1jj2Y 73 0.04504 g.41.8.1 63110 1rlyA 60 0.05503 g.41.3.1 104988 1jj2Z 56 0.1355 g.41.8.2 63111 3cngA 189 0.1476 1dl6A 58 0.2845 g.41.3.1 45207 2apoB 60 0.3502 g.41.16.1 127135 1z3aA 168 0.5112 c.97.1.2 124396 2a8nA 144 0.5676 c.97.1.2 126408 1uaqA 158 0.5819 c.97.1.2 88386 2qjtA 352 0.6703 1tiyA 164 0.7382 c.97.1.2 107012 2ct7A 86 0.8114 g.44.1.4 130791 1wwrA 171 0.9156 c.97.1.2 121366 1vk6A 269 0.9197 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2nx8A 179 1.138 2fmlA 273 1.209 a.4.5.68,d.113.1.6 133778,133779 2rfkB 53 1.305 2b3jA 159 1.317 c.97.1.2 127787 2j015 60 1.341 2e72A 49 1.408 1ltlA 279 1.417 b.40.4.11 84701 2riqA 160 1.456 2ausB 60 1.467 1wkqA 164 1.507 c.97.1.2 109393 2gnrA 145 1.517 1n0zA 45 1.737 g.41.11.1 85247 3c0dA 119 1.907 1ptqA 50 2.337 g.49.1.1 45349 1s72Z 73 2.349 g.41.8.1 105345 2bh0A 208 2.833 1v54F 98 2.972 g.41.5.3 100327 1p6oA 161 3.015 c.97.1.2 94185 2occF 98 3.358 g.41.5.3 45256 2hvwA 184 3.465 1shyB 551 3.580 b.69.12.1,g.16.2.1 105565,105566 3bk3C 67 3.603 1wdxA 69 3.740 1beiA 35 3.784 g.19.1.1 44877 2gbwA 454 4.153 3c7bA 417 4.318 2csbA 519 4.716 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1lv3A 68 4.744 g.39.1.9 78231 1ma3A 253 4.954 c.31.1.5 78883 2ctdA 96 5.017 g.37.1.1,g.37.1.1 130792,130793 1m2kA 249 5.113 c.31.1.5 84754 1vq2A 193 5.199 c.97.1.2 114004 2ih2A 421 5.217 2g84A 197 5.429 c.97.1.2 134766 1g38A 393 5.482 c.66.1.27,d.287.1.1 111567,111568 2conA 79 5.550 g.41.15.1 130680 1eu1A 780 5.750 b.52.2.2,c.81.1.1 26903,35311 2hf1A 68 5.864 1h0hA 977 5.889 b.52.2.2,c.81.1.1 76435,76436 2pvxA 54 5.937 2qjoA 341 5.962 2bmoA 447 6.012 b.33.1.2,d.129.3.3 128804,128805 1ptq 50 6.113 1b71A 191 6.143 a.25.1.1,g.41.5.1 16647,45246 1g8kA 825 6.147 b.52.2.2,c.81.1.1 26920,35328 1iroA 54 6.201 g.41.5.1 45223 2cttA 104 6.641 1kqfA 1015 6.754 b.52.2.2,c.81.1.1 72871,72872 2jmoA 80 6.782 6rxnA 45 6.871 g.41.5.1 45222 1yc5A 246 7.213 c.31.1.5 122910 1yo8A 634 7.243 1yk4A 52 7.301 1iciA 256 7.410 c.31.1.5 62266 2pveA 54 7.737 1g8jA 825 7.786 b.52.2.2,c.81.1.1 26924,35332 1dsvA 31 7.803 g.40.1.1 45174 1jocA 125 7.826 g.50.1.1,h.1.21.1 66990,66991 2b5lC 222 8.000 2dsxA 52 8.294 g.41.5.1 131699 1rb9A 52 8.539 g.41.5.1 45214 4gatA 66 8.600 g.39.1.1 45100 2hr7A 486 8.721 1dgsA 667 9.041 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1b2oA 54 9.145 g.41.5.1 45233 1b13A 54 9.150 g.41.5.1 45227 1q16A 1247 9.243 b.52.2.2,c.81.1.1 95546,95547 1b2jA 54 9.250 g.41.5.1 45231 1h98A 78 9.303 d.58.1.2 65743 2ckfA 454 9.339 2napA 723 9.374 b.52.2.2,c.81.1.1 26926,35334 1cl4A 60 9.736 g.40.1.1 45171 1brfA 53 9.801 g.41.5.1 45236 1p91A 269 9.98 c.66.1.33 94378 1y5iA 1246 10.04 b.52.2.2,c.81.1.1 122639,122640 1j8eA 44 10.14 g.12.1.1 66437 1bq8A 54 10.29 g.41.5.1 45237 1bq9A 54 10.30 g.41.5.1 45238 1sl4A 155 10.40 d.169.1.1 105710 1vqoZ 83 10.49 g.41.8.1 120387 1s5aA 150 10.83 d.17.4.10 98525 2v3vA 723 10.91 1dx8A 70 11.30 g.41.5.1 45243 1vm9A 111 11.36 b.33.1.1 108886 1xm0A 147 11.72 b.88.1.3 122140 1gaxA 862 11.73 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1irxA 523 11.81 a.97.1.2,c.26.1.1 71378,71379 1x6mA 196 11.94 b.88.1.4 114920 1rb9 53 12.21 1sjgA 112 12.63 b.33.1.1 105647 1wd2A 60 12.70 g.44.1.1 109232 1xpaA 122 12.72 a.6.1.2,g.39.1.5 16308,45151 1ajj 37 13.21 2nutA 769 13.47 2b1xA 470 13.61 b.33.1.2,d.129.3.3 127675,127676 2fiyA 309 14.15 e.59.1.1 133540 1l3yA 41 14.20 g.3.11.6 73558 1mfwA 107 14.40 d.15.11.1 84940 1aqjA 421 14.63 c.66.1.27,d.287.1.1 111563,111564 2jo6A 113 14.71 1eg9A 449 14.82 b.33.1.2,d.129.3.3 24443,41322 1ltsA 185 14.86 d.166.1.1 42229 3c7bB 366 15.23 2ibtA 421 15.39 c.66.1.27,d.287.1.1 137205,137206 1q1aA 289 15.44 c.31.1.5 95561 2i13A 190 15.61 k.12.1.1 136964 1kte 105 15.73 1uliA 460 15.76 b.33.1.2,d.129.3.3 107921,107922 1jy2P 48 16.13 h.1.8.1 67442 2fdn 55 16.17 1f5yA 85 17.21 g.12.1.1,g.12.1.1 44610,44611 1vfyA 73 17.66 g.50.1.1 45357 2pmzP 48 17.75 7fd1A 106 18.49 d.58.1.2 38953 1l1dA 152 18.49 b.88.1.3 73452 2i5oA 39 18.62 1ajjA 37 19.05 g.12.1.1 44609 1ro5A 201 19.28 d.108.1.3 105023 2e4qA 109 19.66 1gntA 553 19.95 e.26.1.1 70290 1ryqA 69 20.02 g.41.9.3 105126 1s5pA 235 20.04 c.31.1.5 98569 2d8qA 70 20.80 g.85.1.1 131335 2hjhA 354 21.13 2gb4A 252 21.47 2bngA 149 21.61 2e7zA 727 22.20 1twfL 70 22.39 g.41.9.2 112737 2j01V 101 22.52 1kzfA 230 22.56 d.108.1.3 73354 1npoC 95 22.60 b.9.1.1 23271 2baiA 32 22.61 g.87.1.1 128237 2hldG 278 22.69 2bx9A 53 22.84 2fcwB 80 22.93 g.12.1.1,g.12.1.1 133289,133290 3bm4A 210 24.16 1ryt 190 24.83 2admA 421 25.12 c.66.1.27,d.287.1.1 111611,111612 1l5cA 92 25.18 b.9.1.1 73577 1vqo1 57 25.32 2de6A 392 25.71 b.33.1.2,d.129.3.3 131415,131416 1lkoA 191 26.05 a.25.1.1,g.41.5.1 78063,78064 1fqtA 112 26.14 b.33.1.1 24441 1q98A 165 26.32 c.47.1.10 96253 1ndoA 449 26.45 b.33.1.2,d.129.3.3 24444,41323 1wjnA 97 26.52 d.15.1.1 114703 2vpzA 765 26.86 1jhdA 396 27.14 b.122.1.3,c.26.1.5 66712,66713 1npoA 95 27.37 b.9.1.1 23270 1h8eG 272 27.42 c.49.2.1 60756 1z02A 446 28.24 1lml 478 28.24 1wqkA 42 29.36 2oap1 511 29.40 1jjdA 55 29.41 g.46.1.1 63116 1qw2A 102 30.35 d.249.1.1 96456 1dvpA 220 30.40 a.118.9.2,g.50.1.1 19216,45358 2d8aA 348 30.42 3c5kA 109 30.46 1xbtA 193 31.25 c.37.1.24,g.39.1.14 115080,115081 2ba1A 179 31.38 1zoyB 252 31.84 1knwA 425 31.91 b.49.2.3,c.1.6.1 90969,90970 1mzbA 136 31.93 a.4.5.42 91497 2qkdA 404 31.98 1g0sA 209 32.02 d.113.1.1 60187 1th5A 74 32.21 d.52.8.1 119263 1hdlA 55 32.38 g.68.1.2 65808 2g45A 129 32.66 1mmcA 30 32.87 g.3.1.2 44061 1l8dA 112 33.26 h.4.12.1 73687 3bwwA 307 34.47 2h88B 252 34.88 1ee8A 266 34.91 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1u5mA 73 34.96 g.27.1.2 113043 1gh9A 71 35.14 g.41.6.1 45266 1icwA 72 35.80 d.9.1.1 37357 2b4yA 271 36.21 c.31.1.5 127868 1vqo3 92 36.29 1u5kA 244 36.46 b.40.4.13,g.45.1.2 113038,113039 2v2kA 105 36.59 1twfI 122 36.86 g.41.3.1,g.41.3.1 112733,112734 2ivfB 352 37.20 1e79G 272 37.26 c.49.2.1 33158 1p3y1 194 37.69 1b8sA 504 37.80 c.3.1.2,d.16.1.1 30335,37866 1ykfA 352 38.52 b.35.1.2,c.2.1.1 24757,29773 2jrrA 67 38.92 2gmgA 105 39.05 2olmA 140 39.45 1w4rA 195 39.82 1yymG 313 39.92 d.172.1.1 124232 1yfuA 174 39.95 b.82.1.20 123094 2pg3A 232 39.96 1cr8A 42 40.09 g.12.1.1 44613 2fbwB 252 40.15 2ck3G 272 40.34 c.49.2.1 130562 2f8lA 344 40.46 c.66.1.45 133132 1hyiA 65 40.56 g.50.1.1 61406 1x3zA 335 40.87 d.3.1.4 121673 1k82A 268 41.62 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1ovnA 248 41.96 a.71.1.1,c.47.1.7 93602,93603 1b0tA 106 42.78 d.58.1.2 38965 2owaA 138 42.91 2j6aA 141 43.00 2orwA 184 43.05 2aqaA 63 43.25 g.41.16.1 127168 2bs2B 241 43.64 a.1.2.1,d.15.4.2 129033,129034 1o9gA 250 43.73 c.66.1.29 86692 1erdA 40 43.96 a.10.1.1 16362 2yrkA 55 43.97 2ivfA 976 44.21 1pedA 351 44.83 b.35.1.2,c.2.1.1 24753,29769 2jdiG 273 45.26 c.49.2.1 138272 1g7eA 122 46.20 c.47.1.7 33055 1wo3A 25 46.52 2gliA 160 47.62 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1p0fA 373 47.75 b.35.1.2,c.2.1.1 87642,87643 1kevA 351 48.32 b.35.1.2,c.2.1.1 24749,29765 2eppA 66 48.51 2nswA 60 50.00 2p57A 144 50.73 1yukB 120 50.82 2bn2A 95 50.86 b.9.1.1 23266 1l1zA 274 51.42 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2iv2X 715 51.42 b.52.2.2,c.81.1.1 137714,137715 2jvmA 80 51.64 1kbeA 49 52.20 g.49.1.1 68380 2qgvA 140 53.05 1pl8A 356 53.15 b.35.1.2,c.2.1.1 94878,94879 1nwwA 149 53.23 d.17.4.8 86306 1u3wA 374 53.28 b.35.1.2,c.2.1.1 113013,113014 1eyoA 30 53.36 g.3.6.1 44098 1e3jA 352 53.66 b.35.1.2,c.2.1.1 24765,29781 1bw3A 125 53.70 b.52.1.2 26899 1r4yA 136 53.84 d.1.1.3 97056 1boeA 47 53.94 g.3.9.1 44187 1a1tA 55 54.02 g.40.1.1 45165 2q3wA 111 54.28 b.33.1.1 139813 2ohxA 374 54.33 b.35.1.2,c.2.1.1 24669,29685 2p35A 259 54.41 2jrpA 81 54.74 2nutB 753 55.02 2cdcA 366 55.27 1ee2A 373 55.34 b.35.1.2,c.2.1.1 24663,29679 2nvaA 372 56.35 2iqjA 134 56.92 1jvbA 347 57.13 b.35.1.2,c.2.1.1 77181,77182 2atrA 138 57.24 d.108.1.1 127305 1ldjB 90 57.32 g.44.1.1 73850 1ug1A 92 57.48 b.34.2.1 99360 1wo6A 25 57.95 1xx6A 191 58.00 c.37.1.24,g.39.1.14 116139,116140 1kolA 398 58.23 b.35.1.2,c.2.1.1 77474,77475 1a7iA 81 58.77 g.39.1.3,g.39.1.3 45143,45144 1gatA 60 59.35 g.39.1.1 45106 1oqqA 106 59.38 d.15.4.1 93422 1k3xA 262 59.51 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1fljA 260 59.71 b.74.1.1 27954 3cxkA 164 59.97 2fe3A 145 60.79 1zncA 266 62.24 b.74.1.1 27955 1plfA 72 62.37 d.9.1.1 37373 2c7nA 74 62.70 g.39.1.15 130069 1g73C 121 63.01 g.52.1.1 45375 1de3A 150 63.74 d.1.1.3 36240 2r0lB 35 64.04 3ch0A 272 64.11 1p0hA 318 64.60 d.108.1.1 93866 1vhzA 198 64.69 d.113.1.1 100718 1jqbA 351 64.96 b.35.1.2,c.2.1.1 77151,77152 1wo7A 25 66.35 1jk4A 89 66.39 b.9.1.1 77130 2b8tA 223 66.59 c.37.1.24,g.39.1.14 128109,128110 2poiA 94 67.09 1adwA 123 67.51 b.6.1.1 22893 2cjsC 62 67.71 1wqjB 80 68.16 1jd0A 263 68.27 b.74.1.1 62888 1uwvA 433 68.69 b.40.4.12,c.66.1.40 100128,100129 1qorA 327 68.91 b.35.1.2,c.2.1.1 24766,29782 2v0cA 878 69.46 2cy9A 140 69.99 d.38.1.5 131019 1zbdB 134 70.50 g.50.1.1 45359 2bs6A 90 70.51 2idaA 102 71.26 1f3hA 142 71.50 g.52.1.1 45381 1p90A 145 71.80 c.55.5.2 94377 2fs2A 151 72.37 d.38.1.5 134003 1qdpA 42 72.52 g.3.6.2 44113 1y02A 120 73.37 a.140.2.1,g.50.1.1 116278,116279 1h7xA 1025 73.48 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1zntA 31 74.07 1vj0A 380 74.34 b.35.1.2,c.2.1.1 100786,100787 1tuhA 156 75.40 d.17.4.11 107345 1gmyA 261 75.78 d.3.1.1 76236 1h2bA 359 75.95 b.35.1.2,c.2.1.1 90543,90544 2h2tB 175 75.98 1bv8A 138 76.82 b.2.4.1 22430 1n35A 1267 77.06 e.8.1.4 79935 1lugA 259 77.16 b.74.1.1 91127 1d7kA 421 77.87 b.49.2.3,c.1.6.1 26486,28648 1bs9 207 78.48 1zkiA 133 78.66 d.38.1.5 125199 1zy7A 403 79.00 2e74D 179 79.22 b.33.1.1,f.23.12.1 132049,132050 2gatA 66 79.41 g.39.1.1 45102 2vil 126 79.44 1ile 821 80.15 2oizD 135 80.45 1e1dA 553 80.72 e.26.1.1 43363 1vjwA 60 80.87 d.58.1.4 38991 3d9tA 97 81.42 1uv0A 149 81.47 d.169.1.1 100028 1a15A 67 82.01 d.9.1.1 37451 2pspA 106 82.85 g.16.1.1,g.16.1.1 44730,44731 1c2uA 35 82.85 g.19.1.1 44878 1k7cA 233 83.67 c.23.10.4 68267 1y8qB 640 84.05 1y7wA 291 85.39 2vm5A 106 85.89 1f5xA 208 85.99 a.87.1.1 18516 2trxA 108 86.06 c.47.1.1 32719 1f8fA 371 86.26 b.35.1.2,c.2.1.1 83246,83247 1o7nA 449 86.49 b.33.1.2,d.129.3.3 81162,81163 1x6vA 630 86.59 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1hkvA 453 87.16 b.49.2.3,c.1.6.1 83559,83560 1jrfA 47 88.73 g.12.1.1 71824 1k12A 158 89.18 b.18.1.15 71978 2b5wA 357 89.36 1p9gA 41 89.39 g.3.1.1 104091 1fu9A 36 89.39 g.37.1.2 45074