# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.03852 g.41.8.1 45315 1jj2Y 73 0.04478 g.41.8.1 63110 1rlyA 60 0.05033 g.41.3.1 104988 3cngA 189 0.1203 1jj2Z 56 0.1620 g.41.8.2 63111 1dl6A 58 0.2712 g.41.3.1 45207 2apoB 60 0.4322 g.41.16.1 127135 1z3aA 168 0.4833 c.97.1.2 124396 1uaqA 158 0.5697 c.97.1.2 88386 2a8nA 144 0.7176 c.97.1.2 126408 2qjtA 352 0.7538 2ct7A 86 0.8442 g.44.1.4 130791 1vk6A 269 0.8562 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1tiyA 164 0.9264 c.97.1.2 107012 2e72A 49 1.199 2fmlA 273 1.256 a.4.5.68,d.113.1.6 133778,133779 2riqA 160 1.289 2nx8A 179 1.302 1ltlA 279 1.334 b.40.4.11 84701 2rfkB 53 1.341 1wwrA 171 1.369 c.97.1.2 121366 2ausB 60 1.463 2j015 60 1.490 2gnrA 145 1.680 3c0dA 119 1.702 2b3jA 159 1.730 c.97.1.2 127787 1n0zA 45 1.841 g.41.11.1 85247 1wkqA 164 1.935 c.97.1.2 109393 1ptqA 50 2.455 g.49.1.1 45349 1s72Z 73 2.564 g.41.8.1 105345 1v54F 98 3.122 g.41.5.3 100327 2hvwA 184 3.509 1p6oA 161 3.588 c.97.1.2 94185 2bh0A 208 3.768 2occF 98 3.771 g.41.5.3 45256 1wdxA 69 3.864 2gbwA 454 3.882 1shyB 551 3.973 b.69.12.1,g.16.2.1 105565,105566 3bk3C 67 4.079 1beiA 35 4.315 g.19.1.1 44877 1lv3A 68 4.652 g.39.1.9 78231 2ctdA 96 5.649 g.37.1.1,g.37.1.1 130792,130793 2bmoA 447 5.700 b.33.1.2,d.129.3.3 128804,128805 1h0hA 977 5.834 b.52.2.2,c.81.1.1 76435,76436 2qjoA 341 5.901 2pvxA 54 5.919 1g8kA 825 6.117 b.52.2.2,c.81.1.1 26920,35328 1ma3A 253 6.193 c.31.1.5 78883 2csbA 519 6.232 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1iroA 54 6.249 g.41.5.1 45223 3c7bA 417 6.340 1ptq 50 6.460 1kqfA 1015 6.472 b.52.2.2,c.81.1.1 72871,72872 1b71A 191 6.480 a.25.1.1,g.41.5.1 16647,45246 2g84A 197 6.542 c.97.1.2 134766 2b5lC 222 6.543 2ih2A 421 6.550 1m2kA 249 6.581 c.31.1.5 84754 1eu1A 780 6.582 b.52.2.2,c.81.1.1 26903,35311 6rxnA 45 6.931 g.41.5.1 45222 1yo8A 634 7.002 2cttA 104 7.015 2conA 79 7.100 g.41.15.1 130680 1g38A 393 7.186 c.66.1.27,d.287.1.1 111567,111568 1vq2A 193 7.343 c.97.1.2 114004 1yk4A 52 7.436 1yc5A 246 7.725 c.31.1.5 122910 1dsvA 31 7.806 g.40.1.1 45174 1g8jA 825 7.913 b.52.2.2,c.81.1.1 26924,35332 2hf1A 68 8.003 2pveA 54 8.005 2dsxA 52 8.157 g.41.5.1 131699 1q16A 1247 8.310 b.52.2.2,c.81.1.1 95546,95547 1jocA 125 8.727 g.50.1.1,h.1.21.1 66990,66991 1s5aA 150 8.751 d.17.4.10 98525 1rb9A 52 8.822 g.41.5.1 45214 2ckfA 454 8.833 2jmoA 80 9.093 1iciA 256 9.255 c.31.1.5 62266 1cl4A 60 9.338 g.40.1.1 45171 1dgsA 667 9.371 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1y5iA 1246 9.553 b.52.2.2,c.81.1.1 122639,122640 1b2oA 54 9.687 g.41.5.1 45233 1b13A 54 9.703 g.41.5.1 45227 2napA 723 9.723 b.52.2.2,c.81.1.1 26926,35334 1b2jA 54 9.749 g.41.5.1 45231 4gatA 66 9.821 g.39.1.1 45100 1vqoZ 83 9.96 g.41.8.1 120387 1p91A 269 10.02 c.66.1.33 94378 2hr7A 486 10.35 1irxA 523 10.39 a.97.1.2,c.26.1.1 71378,71379 1vm9A 111 10.56 b.33.1.1 108886 2v3vA 723 10.71 1brfA 53 10.73 g.41.5.1 45236 1dx8A 70 10.98 g.41.5.1 45243 1bq9A 54 11.14 g.41.5.1 45238 1bq8A 54 11.24 g.41.5.1 45237 1xm0A 147 11.42 b.88.1.3 122140 1xpaA 122 11.64 a.6.1.2,g.39.1.5 16308,45151 1x6mA 196 11.70 b.88.1.4 114920 2b1xA 470 12.18 b.33.1.2,d.129.3.3 127675,127676 2jo6A 113 12.52 1gaxA 862 12.58 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1rb9 53 12.78 2nutA 769 13.11 1sjgA 112 13.19 b.33.1.1 105647 1j8eA 44 13.22 g.12.1.1 66437 1ro5A 201 13.56 d.108.1.3 105023 1eg9A 449 13.65 b.33.1.2,d.129.3.3 24443,41322 1wd2A 60 13.96 g.44.1.1 109232 1l3yA 41 14.19 g.3.11.6 73558 1sl4A 155 14.48 d.169.1.1 105710 1uliA 460 14.62 b.33.1.2,d.129.3.3 107921,107922 1h98A 78 16.08 d.58.1.2 65743 2fiyA 309 16.20 e.59.1.1 133540 2e4qA 109 16.25 2bngA 149 16.29 3bm4A 210 16.49 2pmzP 48 16.65 1ltsA 185 16.65 d.166.1.1 42229 1kzfA 230 17.42 d.108.1.3 73354 1q1aA 289 17.53 c.31.1.5 95561 2i13A 190 17.69 k.12.1.1 136964 1kte 105 18.95 1ajj 37 19.20 1z02A 446 19.23 2de6A 392 19.36 b.33.1.2,d.129.3.3 131415,131416 2i5oA 39 19.39 1aqjA 421 20.15 c.66.1.27,d.287.1.1 111563,111564 2ibtA 421 20.15 c.66.1.27,d.287.1.1 137205,137206 2e7zA 727 20.36 1l1dA 152 20.41 b.88.1.3 73452 1wjnA 97 21.05 d.15.1.1 114703 1fqtA 112 21.30 b.33.1.1 24441 7fd1A 106 21.58 d.58.1.2 38953 1s5pA 235 21.69 c.31.1.5 98569 1f5yA 85 21.76 g.12.1.1,g.12.1.1 44610,44611 2d8qA 70 22.47 g.85.1.1 131335 1ndoA 449 22.89 b.33.1.2,d.129.3.3 24444,41323 1ryqA 69 23.57 g.41.9.3 105126 1gntA 553 23.61 e.26.1.1 70290 1npoC 95 23.79 b.9.1.1 23271 1jy2P 48 23.89 h.1.8.1 67442 1vfyA 73 23.92 g.50.1.1 45357 1q98A 165 23.95 c.47.1.10 96253 2j01V 101 24.50 1twfL 70 24.92 g.41.9.2 112737 2fdn 55 24.95 2baiA 32 26.21 g.87.1.1 128237 1ryt 190 26.49 1ajjA 37 27.00 g.12.1.1 44609 1qw2A 102 27.19 d.249.1.1 96456 2vpzA 765 27.41 1l5cA 92 27.51 b.9.1.1 73577 1lml 478 27.55 2hldG 278 27.64 1jhdA 396 27.78 b.122.1.3,c.26.1.5 66712,66713 1lkoA 191 27.88 a.25.1.1,g.41.5.1 78063,78064 2hjhA 354 28.25 3c7bB 366 28.75 1h8eG 272 29.28 c.49.2.1 60756 2qkdA 404 29.45 2bx9A 53 29.50 1npoA 95 30.14 b.9.1.1 23270 2gb4A 252 30.58 1zoyB 252 31.16 2fcwB 80 31.20 g.12.1.1,g.12.1.1 133289,133290 1mfwA 107 31.47 d.15.11.1 84940 1jjdA 55 31.94 g.46.1.1 63116 1gh9A 71 32.45 g.41.6.1 45266 1yymG 313 32.80 d.172.1.1 124232 2ba1A 179 33.06 3c5kA 109 33.21 2b4yA 271 33.40 c.31.1.5 127868 1u5kA 244 33.78 b.40.4.13,g.45.1.2 113038,113039 1vhzA 198 33.98 d.113.1.1 100718 2g45A 129 34.09 1vqo3 92 34.38 2h88B 252 34.86 1u5mA 73 34.88 g.27.1.2 113043 1mzbA 136 35.02 a.4.5.42 91497 1yfuA 174 35.32 b.82.1.20 123094 2admA 421 36.93 c.66.1.27,d.287.1.1 111611,111612 1l8dA 112 37.18 h.4.12.1 73687 2owaA 138 37.28 1wqkA 42 37.72 2oap1 511 37.96 1mmcA 30 38.03 g.3.1.2 44061 1ykfA 352 38.22 b.35.1.2,c.2.1.1 24757,29773 1twfI 122 38.55 g.41.3.1,g.41.3.1 112733,112734 2j6aA 141 39.13 1icwA 72 39.25 d.9.1.1 37357 2gmgA 105 39.35 1g0sA 209 39.74 d.113.1.1 60187 2bs2B 241 39.76 a.1.2.1,d.15.4.2 129033,129034 2jrrA 67 39.90 1xbtA 193 39.93 c.37.1.24,g.39.1.14 115080,115081 1dvpA 220 40.73 a.118.9.2,g.50.1.1 19216,45358 1b8sA 504 40.78 c.3.1.2,d.16.1.1 30335,37866 1p3y1 194 40.91 1vqo1 57 41.23 1x3zA 335 41.44 d.3.1.4 121673 1nwwA 149 41.94 d.17.4.8 86306 1o9gA 250 42.12 c.66.1.29 86692 2d8aA 348 42.57 2olmA 140 42.86 1ee8A 266 42.93 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2ck3G 272 43.08 c.49.2.1 130562 1th5A 74 43.32 d.52.8.1 119263 3bwwA 307 44.37 1cr8A 42 44.51 g.12.1.1 44613 2fbwB 252 44.81 2ivfA 976 45.30 1k82A 268 45.45 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2ivfB 352 45.65 1hdlA 55 46.28 g.68.1.2 65808 2q3wA 111 46.70 b.33.1.1 139813 1e79G 272 46.91 c.49.2.1 33158 2jrpA 81 47.30 2f8lA 344 47.33 c.66.1.45 133132 1p0fA 373 47.45 b.35.1.2,c.2.1.1 87642,87643 1knwA 425 47.50 b.49.2.3,c.1.6.1 90969,90970 1pl8A 356 47.65 b.35.1.2,c.2.1.1 94878,94879 2gliA 160 47.97 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1pedA 351 48.08 b.35.1.2,c.2.1.1 24753,29769 2orwA 184 48.10 1ovnA 248 48.13 a.71.1.1,c.47.1.7 93602,93603 2p57A 144 48.58 1erdA 40 48.60 a.10.1.1 16362 1eyoA 30 48.67 g.3.6.1 44098 1kevA 351 49.95 b.35.1.2,c.2.1.1 24749,29765 1hyiA 65 50.08 g.50.1.1 61406 1e3jA 352 50.12 b.35.1.2,c.2.1.1 24765,29781 2cdcA 366 50.28 2qgvA 140 50.31 2fs2A 151 50.39 d.38.1.5 134003 2jdiG 273 50.56 c.49.2.1 138272 1w4rA 195 51.20 2iqjA 134 51.44 2pg3A 232 51.62 2v2kA 105 51.70 2eppA 66 52.20 1wo3A 25 52.39 1a1tA 55 53.36 g.40.1.1 45165 1g7eA 122 53.96 c.47.1.7 33055 1boeA 47 54.59 g.3.9.1 44187 2jvmA 80 54.76 1u3wA 374 54.85 b.35.1.2,c.2.1.1 113013,113014 1tuhA 156 55.30 d.17.4.11 107345 2ohxA 374 56.09 b.35.1.2,c.2.1.1 24669,29685 1jvbA 347 57.56 b.35.1.2,c.2.1.1 77181,77182 1kolA 398 57.73 b.35.1.2,c.2.1.1 77474,77475 2nutB 753 57.80 2atrA 138 58.36 d.108.1.1 127305 2bn2A 95 58.40 b.9.1.1 23266 1a7iA 81 58.50 g.39.1.3,g.39.1.3 45143,45144 1yukB 120 58.55 2iv2X 715 58.88 b.52.2.2,c.81.1.1 137714,137715 1gatA 60 59.03 g.39.1.1 45106 1kbeA 49 59.12 g.49.1.1 68380 2fe3A 145 59.35 1b0tA 106 59.52 d.58.1.2 38965 1ee2A 373 59.59 b.35.1.2,c.2.1.1 24663,29679 1p0hA 318 60.31 d.108.1.1 93866 1g73C 121 61.41 g.52.1.1 45375 2bs6A 90 61.52 2yrkA 55 63.71 1k3xA 262 63.88 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2nswA 60 64.22 1l1zA 274 64.48 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1zkiA 133 64.70 d.38.1.5 125199 1jqbA 351 64.81 b.35.1.2,c.2.1.1 77151,77152 1ug1A 92 64.99 b.34.2.1 99360 1wo6A 25 66.48 3ch0A 272 66.59 1a15A 67 66.75 d.9.1.1 37451 1r4yA 136 66.91 d.1.1.3 97056 1zbdB 134 67.27 g.50.1.1 45359 1qorA 327 67.37 b.35.1.2,c.2.1.1 24766,29782 2aqaA 63 67.42 g.41.16.1 127168 2gatA 66 67.51 g.39.1.1 45102 1keoA 154 68.04 b.64.1.1 68534 1bv8A 138 68.28 b.2.4.1 22430 2e74D 179 68.30 b.33.1.1,f.23.12.1 132049,132050 1jk4A 89 68.36 b.9.1.1 77130 3cxkA 164 68.82 2idaA 102 69.11 1vj0A 380 69.24 b.35.1.2,c.2.1.1 100786,100787 1fljA 260 69.77 b.74.1.1 27954 1oqqA 106 70.03 d.15.4.1 93422 2r0lB 35 70.10 1f3hA 142 70.21 g.52.1.1 45381 1h2bA 359 70.64 b.35.1.2,c.2.1.1 90543,90544 1xx6A 191 70.74 c.37.1.24,g.39.1.14 116139,116140 1ldjB 90 72.86 g.44.1.1 73850 1bs9 207 73.23 1t3vA 124 73.37 c.55.5.1 112232 2poiA 94 73.69 1de3A 150 73.71 d.1.1.3 36240 1plfA 72 74.08 d.9.1.1 37373 1zncA 266 74.52 b.74.1.1 27955 1qdpA 42 75.25 g.3.6.2 44113 2b5wA 357 75.99 1p90A 145 76.03 c.55.5.2 94377 1wo7A 25 77.13 2v0cA 878 78.25 1lugA 259 78.50 b.74.1.1 91127 1o7nA 449 78.83 b.33.1.2,d.129.3.3 81162,81163 2vil 126 79.78 1f8fA 371 79.89 b.35.1.2,c.2.1.1 83246,83247 2c7nA 74 80.34 g.39.1.15 130069 2p35A 259 81.72 1zntA 31 82.09 1x6vA 630 82.29 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1bw3A 125 82.50 b.52.1.2 26899 1wqjB 80 83.03 2i7fA 108 83.23 1y02A 120 84.15 a.140.2.1,g.50.1.1 116278,116279 2nvaA 372 84.36 2b8tA 223 84.56 c.37.1.24,g.39.1.14 128109,128110 2cy9A 140 85.09 d.38.1.5 131019 1p9gA 41 85.34 g.3.1.1 104091 2cjsC 62 88.37 1gmyA 261 88.39 d.3.1.1 76236 3d9tA 97 88.77 1adwA 123 89.38 b.6.1.1 22893 1h7xA 1025 89.71 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011