# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.2267 g.41.8.1 45315 1rlyA 60 0.2359 g.41.3.1 104988 1jj2Z 56 0.3305 g.41.8.2 63111 1jj2Y 73 0.3825 g.41.8.1 63110 2qjtA 352 0.6998 3cngA 189 0.7143 1dl6A 58 0.8136 g.41.3.1 45207 2j015 60 2.551 2gnrA 145 2.617 2apoB 60 3.116 g.41.16.1 127135 1n0zA 45 3.188 g.41.11.1 85247 1tiyA 164 3.470 c.97.1.2 107012 1vk6A 269 3.974 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2a8nA 144 4.347 c.97.1.2 126408 1v54F 98 4.725 g.41.5.3 100327 1ltlA 279 5.170 b.40.4.11 84701 1z3aA 168 5.321 c.97.1.2 124396 2ausB 60 5.755 2qjoA 341 5.958 1wkqA 164 6.655 c.97.1.2 109393 2ih2A 421 7.625 2cttA 104 7.953 2bmoA 447 8.370 b.33.1.2,d.129.3.3 128804,128805 2riqA 160 8.486 2occF 98 8.607 g.41.5.3 45256 1g38A 393 8.634 c.66.1.27,d.287.1.1 111567,111568 2rfkB 53 8.677 2e72A 49 10.91 2fmlA 273 11.13 a.4.5.68,d.113.1.6 133778,133779 1gaxA 862 11.21 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1x6mA 196 11.51 b.88.1.4 114920 2hvwA 184 11.51 1wwrA 171 11.56 c.97.1.2 121366 2ct7A 86 12.00 g.44.1.4 130791 1s72Z 73 12.03 g.41.8.1 105345 1b71A 191 12.25 a.25.1.1,g.41.5.1 16647,45246 1uaqA 158 12.31 c.97.1.2 88386 1m2kA 249 13.28 c.31.1.5 84754 3c0dA 119 13.32 1ma3A 253 14.28 c.31.1.5 78883 1yc5A 246 14.98 c.31.1.5 122910 2gbwA 454 15.31 1twfI 122 15.55 g.41.3.1,g.41.3.1 112733,112734 2b3jA 159 16.03 c.97.1.2 127787 1iciA 256 17.65 c.31.1.5 62266 1s5aA 150 18.26 d.17.4.10 98525 1beiA 35 18.91 g.19.1.1 44877 3c7bA 417 19.69 3bk3C 67 20.19 1iroA 54 20.88 g.41.5.1 45223 1wdxA 69 23.45 2nx8A 179 23.48 2ibtA 421 24.27 c.66.1.27,d.287.1.1 137205,137206 2pvxA 54 24.75 1q1aA 289 24.75 c.31.1.5 95561 2conA 79 24.82 g.41.15.1 130680 1wqkA 42 25.89 2csbA 519 26.54 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 2bngA 149 26.73 6rxnA 45 27.02 g.41.5.1 45222 1ptqA 50 29.61 g.49.1.1 45349 1yk4A 52 29.93 1b13A 54 30.01 g.41.5.1 45227 1aqjA 421 30.76 c.66.1.27,d.287.1.1 111563,111564 1b2jA 54 30.96 g.41.5.1 45231 2pveA 54 31.77 4gatA 66 31.90 g.39.1.1 45100 1eg9A 449 31.97 b.33.1.2,d.129.3.3 24443,41322 2admA 421 32.54 c.66.1.27,d.287.1.1 111611,111612 2dsxA 52 32.64 g.41.5.1 131699 1rb9A 52 33.24 g.41.5.1 45214 1brfA 53 33.54 g.41.5.1 45236 1vq2A 193 33.75 c.97.1.2 114004 1bq8A 54 35.33 g.41.5.1 45237 1bq9A 54 36.47 g.41.5.1 45238 2hjhA 354 36.59 1uliA 460 36.68 b.33.1.2,d.129.3.3 107921,107922 1eu1A 780 36.91 b.52.2.2,c.81.1.1 26903,35311 1lv3A 68 38.55 g.39.1.9 78231 1ltsA 185 40.22 d.166.1.1 42229 1s5pA 235 40.35 c.31.1.5 98569 1b2oA 54 40.88 g.41.5.1 45233 2b4yA 271 41.49 c.31.1.5 127868 1vqo1 57 41.85 2ctdA 96 42.66 g.37.1.1,g.37.1.1 130792,130793 1dx8A 70 45.07 g.41.5.1 45243 1wjnA 97 45.36 d.15.1.1 114703 2bh0A 208 46.41 1rb9 53 47.24 1xm0A 147 47.26 b.88.1.3 122140 2oap1 511 47.89 1g8kA 825 48.57 b.52.2.2,c.81.1.1 26920,35328 1wqjB 80 51.27 1lkoA 191 51.33 a.25.1.1,g.41.5.1 78063,78064 2eo0A 147 51.43 2jmoA 80 51.54 2pmzP 48 51.84 1icwA 72 51.88 d.9.1.1 37357 1sl4A 155 53.13 d.169.1.1 105710 1vm9A 111 53.94 b.33.1.1 108886 1boeA 47 54.97 g.3.9.1 44187 1ryt 190 55.48 2gmgA 105 55.69 1y6uA 70 55.86 1mfwA 107 56.04 d.15.11.1 84940 2i5oA 39 56.28 2ckfA 454 56.80 1wpiA 133 57.17 c.47.1.18 121146 1j8eA 44 57.79 g.12.1.1 66437 1p6oA 161 59.18 c.97.1.2 94185 1dsvA 31 59.29 g.40.1.1 45174 2hf1A 68 59.94 1g8jA 825 61.05 b.52.2.2,c.81.1.1 26924,35332 2g84A 197 61.59 c.97.1.2 134766 1ajj 37 63.51 1l1zA 274 64.26 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1vqoZ 83 64.71 g.41.8.1 120387 1wd2A 60 65.69 g.44.1.1 109232 3c7bB 366 66.60 1l3yA 41 66.60 g.3.11.6 73558 1crzA 403 68.96 b.68.4.1,c.51.2.1 27629,33211 1hh1A 143 71.43 c.52.1.18 61036 2i13A 190 72.32 k.12.1.1 136964 1yo8A 634 75.17 2baiA 32 75.21 g.87.1.1 128237 1dloB 427 75.97 e.8.1.2 43041 1ptq 50 76.56 2fiyA 309 77.31 e.59.1.1 133540 1g0sA 209 77.81 d.113.1.1 60187 2jvmA 80 77.91 1ndoA 449 81.80 b.33.1.2,d.129.3.3 24444,41323 1j8fA 323 81.96 c.31.1.5 62738 1k82A 268 82.21 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1a15A 67 84.11 d.9.1.1 37451 1qw2A 102 86.44 d.249.1.1 96456 2b5wA 357 86.88 2nutA 769 87.99 1v30A 124 88.01 d.269.1.1 113496 1ee8A 266 89.25 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2ba1A 179 89.32 2qkdA 404 89.61 1mmcA 30 89.67 g.3.1.2 44061