# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jj2Y 73 0.1587 g.41.8.1 63110 1ffkW 73 0.2090 g.41.8.1 45315 1rlyA 60 0.2099 g.41.3.1 104988 3cngA 189 0.3878 1jj2Z 56 0.4752 g.41.8.2 63111 1dl6A 58 1.265 g.41.3.1 45207 2apoB 60 2.073 g.41.16.1 127135 1vm9A 111 2.284 b.33.1.1 108886 2e72A 49 2.410 1s5aA 150 3.009 d.17.4.10 98525 3c7bA 417 3.866 2ct7A 86 4.491 g.44.1.4 130791 2hvwA 184 4.569 2qjtA 352 4.712 1wdxA 69 4.934 1s72Z 73 5.573 g.41.8.1 105345 3c0dA 119 5.711 1z3aA 168 6.257 c.97.1.2 124396 1vk6A 269 6.308 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1beiA 35 6.609 g.19.1.1 44877 2ausB 60 6.657 2j015 60 7.263 2b1xA 470 7.709 b.33.1.2,d.129.3.3 127675,127676 1nl1A 147 9.175 g.14.1.1,g.32.1.1 91949,91950 1jegA 83 9.463 b.34.2.1 66610 1ltlA 279 9.769 b.40.4.11 84701 1uliA 460 10.12 b.33.1.2,d.129.3.3 107921,107922 3bk3C 67 10.22 1tiyA 164 10.25 c.97.1.2 107012 2ot4A 525 10.75 2yweA 600 10.81 1n0zA 45 11.11 g.41.11.1 85247 1ptqA 50 11.28 g.49.1.1 45349 2riqA 160 11.32 1topA 162 12.50 a.39.1.5 17223 2ar0A 541 12.76 c.66.1.45 127185 1fqtA 112 13.53 b.33.1.1 24441 2hu5A 582 14.06 b.69.7.2,c.69.1.33 136763,136764 1wkqA 164 14.12 c.97.1.2 109393 1p22A 435 15.21 a.158.1.1,b.69.4.1 87715,87716 2hf1A 68 15.42 2hesX 330 15.88 2rfkB 53 15.97 1snrA 341 16.63 b.6.1.3,b.6.1.3 105823,105824 1pedA 351 16.66 b.35.1.2,c.2.1.1 24753,29769 2ccmA 191 17.40 1utyA 187 18.20 b.147.1.1 108036 1w4rA 195 18.36 2ck3G 272 20.66 c.49.2.1 130562 2jdiG 273 21.00 c.49.2.1 138272 1lv3A 68 21.16 g.39.1.9 78231 1b2oA 54 21.41 g.41.5.1 45233 3bioA 304 23.44 3c7bB 366 23.45 2fmlA 273 23.58 a.4.5.68,d.113.1.6 133778,133779 2conA 79 23.80 g.41.15.1 130680 1iroA 54 23.85 g.41.5.1 45223 2pvxA 54 24.06 2hr7A 486 24.07 2b5lC 222 24.29 1qguB 519 25.51 c.92.2.3 35626 1ptq 50 26.92 1s4uX 407 26.92 b.69.4.1 112027 1gntA 553 27.15 e.26.1.1 70290 1yk4A 52 28.21 2bmoA 447 29.31 b.33.1.2,d.129.3.3 128804,128805 6rxnA 45 29.79 g.41.5.1 45222 1vhsA 175 29.99 d.108.1.1 100698 2pveA 54 30.03 1g71A 347 30.13 d.264.1.1 43268 1lb3A 182 30.65 a.25.1.1 77873 1b07A 59 30.89 b.34.2.1 24461 1xbtA 193 31.55 c.37.1.24,g.39.1.14 115080,115081 2nutA 769 31.63 1xm0A 147 31.69 b.88.1.3 122140 2dsxA 52 31.98 g.41.5.1 131699 2jmoA 80 32.00 1ykfA 352 32.49 b.35.1.2,c.2.1.1 24757,29773 1vqoZ 83 32.78 g.41.8.1 120387 1p6oA 161 32.84 c.97.1.2 94185 2cttA 104 32.97 1cskA 71 33.08 b.34.2.1 24513 2gnrA 145 33.96 2ivfB 352 34.30 2e4qA 109 34.60 1b13A 54 34.72 g.41.5.1 45227 1b2jA 54 34.90 g.41.5.1 45231 1vquA 374 34.95 1cl4A 60 35.17 g.40.1.1 45171 1ajj 37 35.29 1brfA 53 36.26 g.41.5.1 45236 2azpA 318 37.07 1bq8A 54 37.73 g.41.5.1 45237 1bq9A 54 37.83 g.41.5.1 45238 1ss3A 50 38.77 g.2.3.1 105975 1deoA 233 39.31 c.23.10.4 31345 1so7A 382 40.60 b.68.1.1 112106 1exrA 148 41.17 a.39.1.5 17299 1eg9A 449 42.09 b.33.1.2,d.129.3.3 24443,41322 1ajjA 37 44.01 g.12.1.1 44609 1qw2A 102 46.13 d.249.1.1 96456 2i13A 190 46.71 k.12.1.1 136964 1h32B 138 46.84 a.3.1.1 76620 1fohA 664 47.13 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2z7bA 270 47.30 2pyxA 526 47.67 2d8aA 348 48.12 1jocA 125 48.22 g.50.1.1,h.1.21.1 66990,66991 2bngA 149 48.31 3cxkA 164 48.93 1wxxA 382 49.00 b.122.1.9,c.66.1.51 121418,121419 1twfI 122 49.39 g.41.3.1,g.41.3.1 112733,112734 1vqo1 57 50.42 1dx8A 70 51.17 g.41.5.1 45243 2ctdA 96 52.55 g.37.1.1,g.37.1.1 130792,130793 1wd2A 60 53.07 g.44.1.1 109232 2irpA 208 53.30 2z3zA 706 54.15 1clqA 903 54.69 c.55.3.5,e.8.1.1 33717,43006 1x6mA 196 54.91 b.88.1.4 114920 3c0cA 73 55.20 2fiyA 309 55.86 e.59.1.1 133540 1twfL 70 56.33 g.41.9.2 112737 1vq2A 193 57.81 c.97.1.2 114004 7fd1A 106 58.41 d.58.1.2 38953 1yfuA 174 59.28 b.82.1.20 123094 2pmzP 48 60.30 2jrpA 81 60.62 1rb9A 52 60.88 g.41.5.1 45214 2aqaA 63 61.22 g.41.16.1 127168 2iadB 205 61.71 b.1.1.2,d.19.1.1 21640,38214 1l1nA 183 61.82 b.47.1.4 73476 1rgs 288 61.84 2o88A 58 62.22 4gatA 66 62.95 g.39.1.1 45100 3b9oA 440 63.02 1rtuA 114 63.44 d.1.1.4 36139 1h98A 78 63.46 d.58.1.2 65743 1ryqA 69 63.56 g.41.9.3 105126 1go8P 462 64.12 b.80.7.1,d.92.1.6 76247,76248 1sjgA 112 65.03 b.33.1.1 105647 1vjwA 60 65.61 d.58.1.4 38991 1sg1X 161 68.75 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 1l3yA 41 69.14 g.3.11.6 73558 1hxs3 237 69.44 1rmdA 116 69.53 g.37.1.1,g.44.1.1 45025,45322 2fcwB 80 70.08 g.12.1.1,g.12.1.1 133289,133290 1zkiA 133 72.24 d.38.1.5 125199 2j6gA 266 72.72 1p91A 269 73.21 c.66.1.33 94378 1rb9 53 73.27 2ohxA 374 75.02 b.35.1.2,c.2.1.1 24669,29685 2cohA 202 75.69 a.4.5.4,b.82.3.2 130677,130678 1rydA 387 77.45 c.2.1.3,d.81.1.5 118801,118802 1qorA 327 79.23 b.35.1.2,c.2.1.1 24766,29782 1xpaA 122 80.23 a.6.1.2,g.39.1.5 16308,45151 2cjsC 62 81.51 2d8qA 70 81.61 g.85.1.1 131335 2iwgB 181 83.24 1xx6A 191 84.51 c.37.1.24,g.39.1.14 116139,116140 2i5oA 39 85.27 2fdn 55 85.29 1xclA 235 85.48 c.66.1.16 115127 2g84A 197 86.35 c.97.1.2 134766 1j8eA 44 87.71 g.12.1.1 66437 3b48A 135 88.93