# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jj2Y 73 0.02985 g.41.8.1 63110 1ffkW 73 0.03351 g.41.8.1 45315 1rlyA 60 0.04212 g.41.3.1 104988 3cngA 189 0.08018 1jj2Z 56 0.09798 g.41.8.2 63111 1dl6A 58 0.2068 g.41.3.1 45207 2apoB 60 0.2800 g.41.16.1 127135 2e72A 49 0.3980 1uaqA 158 0.6141 c.97.1.2 88386 1z3aA 168 0.6387 c.97.1.2 124396 1ltlA 279 0.7274 b.40.4.11 84701 2a8nA 144 0.7500 c.97.1.2 126408 1vk6A 269 0.7726 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2ct7A 86 0.7871 g.44.1.4 130791 3c0dA 119 0.9232 2ausB 60 1.011 2gnrA 145 1.042 2rfkB 53 1.065 2j015 60 1.128 1tiyA 164 1.158 c.97.1.2 107012 2riqA 160 1.221 1s72Z 73 1.246 g.41.8.1 105345 3c7bA 417 1.293 1n0zA 45 1.418 g.41.11.1 85247 2qjtA 352 1.498 2b3jA 159 1.539 c.97.1.2 127787 1wkqA 164 1.641 c.97.1.2 109393 2nx8A 179 1.883 1v54F 98 1.901 g.41.5.3 100327 2bh0A 208 2.221 2occF 98 2.244 g.41.5.3 45256 1ptqA 50 2.293 g.49.1.1 45349 1wwrA 171 2.414 c.97.1.2 121366 2fmlA 273 2.506 a.4.5.68,d.113.1.6 133778,133779 2gbwA 454 2.526 1shyB 551 2.782 b.69.12.1,g.16.2.1 105565,105566 3bk3C 67 2.864 1wdxA 69 3.398 1lv3A 68 3.523 g.39.1.9 78231 1iroA 54 3.537 g.41.5.1 45223 2pvxA 54 3.557 1beiA 35 3.721 g.19.1.1 44877 1p6oA 161 3.855 c.97.1.2 94185 1yo8A 634 3.964 2hf1A 68 4.031 2hvwA 184 4.099 2conA 79 4.160 g.41.15.1 130680 1yk4A 52 4.289 1m2kA 249 4.413 c.31.1.5 84754 6rxnA 45 4.437 g.41.5.1 45222 1kqfA 1015 4.506 b.52.2.2,c.81.1.1 72871,72872 2pveA 54 4.658 2ctdA 96 4.734 g.37.1.1,g.37.1.1 130792,130793 1rb9A 52 4.817 g.41.5.1 45214 2jmoA 80 4.840 1xm0A 147 4.840 b.88.1.3 122140 2b5lC 222 4.892 1h0hA 977 4.955 b.52.2.2,c.81.1.1 76435,76436 2dsxA 52 5.011 g.41.5.1 131699 1p91A 269 5.047 c.66.1.33 94378 1g8kA 825 5.051 b.52.2.2,c.81.1.1 26920,35328 1eu1A 780 5.341 b.52.2.2,c.81.1.1 26903,35311 1dsvA 31 5.359 g.40.1.1 45174 1b13A 54 5.425 g.41.5.1 45227 1b2jA 54 5.443 g.41.5.1 45231 2bmoA 447 5.525 b.33.1.2,d.129.3.3 128804,128805 1g8jA 825 5.534 b.52.2.2,c.81.1.1 26924,35332 1b2oA 54 5.583 g.41.5.1 45233 1dgsA 667 5.696 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1brfA 53 5.751 g.41.5.1 45236 1s5aA 150 5.777 d.17.4.10 98525 1ptq 50 5.794 1bq9A 54 6.003 g.41.5.1 45238 1bq8A 54 6.021 g.41.5.1 45237 1iciA 256 6.079 c.31.1.5 62266 1sjgA 112 6.214 b.33.1.1 105647 1vm9A 111 6.792 b.33.1.1 108886 1g38A 393 6.907 c.66.1.27,d.287.1.1 111567,111568 1rb9 53 6.964 1uliA 460 6.968 b.33.1.2,d.129.3.3 107921,107922 1cl4A 60 7.036 g.40.1.1 45171 1vq2A 193 7.047 c.97.1.2 114004 1sl4A 155 7.066 d.169.1.1 105710 2qjoA 341 7.162 1ma3A 253 7.613 c.31.1.5 78883 2bngA 149 7.755 3c7bB 366 7.800 1dx8A 70 7.883 g.41.5.1 45243 1b71A 191 7.967 a.25.1.1,g.41.5.1 16647,45246 2cttA 104 7.998 2ih2A 421 8.384 1eg9A 449 8.437 b.33.1.2,d.129.3.3 24443,41322 1vqoZ 83 8.788 g.41.8.1 120387 2ckfA 454 8.798 1jocA 125 9.126 g.50.1.1,h.1.21.1 66990,66991 4gatA 66 9.150 g.39.1.1 45100 1wd2A 60 9.378 g.44.1.1 109232 1q16A 1247 9.822 b.52.2.2,c.81.1.1 95546,95547 1y5iA 1246 9.919 b.52.2.2,c.81.1.1 122639,122640 1h98A 78 9.97 d.58.1.2 65743 1yc5A 246 10.06 c.31.1.5 122910 1x6mA 196 10.12 b.88.1.4 114920 2i13A 190 10.48 k.12.1.1 136964 2g84A 197 10.55 c.97.1.2 134766 1gntA 553 11.14 e.26.1.1 70290 1ee8A 266 11.15 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 7fd1A 106 11.25 d.58.1.2 38953 2fiyA 309 11.35 e.59.1.1 133540 1l3yA 41 11.37 g.3.11.6 73558 2hr7A 486 11.65 2e4qA 109 11.68 2nutA 769 11.68 2napA 723 11.97 b.52.2.2,c.81.1.1 26926,35334 2v3vA 723 12.27 2d8qA 70 12.42 g.85.1.1 131335 2b1xA 470 12.46 b.33.1.2,d.129.3.3 127675,127676 1twfI 122 12.94 g.41.3.1,g.41.3.1 112733,112734 2ba1A 179 12.96 1ro5A 201 13.10 d.108.1.3 105023 1ndoA 449 13.27 b.33.1.2,d.129.3.3 24444,41323 2pmzP 48 13.44 1kzfA 230 14.01 d.108.1.3 73354 1j8eA 44 14.14 g.12.1.1 66437 1twfL 70 14.18 g.41.9.2 112737 1irxA 523 14.34 a.97.1.2,c.26.1.1 71378,71379 1ltsA 185 14.35 d.166.1.1 42229 2jo6A 113 15.03 1l1zA 274 15.08 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1wjnA 97 15.37 d.15.1.1 114703 2csbA 519 15.48 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1ajj 37 15.80 1k82A 268 16.19 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1ryqA 69 16.19 g.41.9.3 105126 2e7zA 727 16.30 2fdn 55 16.93 1gaxA 862 17.19 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1q1aA 289 17.24 c.31.1.5 95561 1lml 478 17.83 2i5oA 39 17.99 1lkoA 191 18.21 a.25.1.1,g.41.5.1 78063,78064 1s5pA 235 18.64 c.31.1.5 98569 1k3xA 262 19.22 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1ryt 190 19.59 2vpzA 765 19.79 1vqo3 92 19.88 2qkdA 404 19.97 1yfuA 174 20.19 b.82.1.20 123094 1xpaA 122 20.66 a.6.1.2,g.39.1.5 16308,45151 1l5cA 92 20.99 b.9.1.1 73577 2ibtA 421 21.10 c.66.1.27,d.287.1.1 137205,137206 2hldG 278 21.16 1npoA 95 21.31 b.9.1.1 23270 2gb4A 252 21.51 1vqo1 57 21.55 1fqtA 112 21.73 b.33.1.1 24441 1ajjA 37 21.94 g.12.1.1 44609 2baiA 32 22.01 g.87.1.1 128237 1mfwA 107 22.09 d.15.11.1 84940 3bm4A 210 22.21 1mmcA 30 22.61 g.3.1.2 44061 1f5yA 85 23.02 g.12.1.1,g.12.1.1 44610,44611 2cjsC 62 23.39 1hdlA 55 23.43 g.68.1.2 65808 1npoC 95 24.08 b.9.1.1 23271 2v2kA 105 24.12 1zoyB 252 25.38 2de6A 392 25.52 b.33.1.2,d.129.3.3 131415,131416 2g45A 129 26.08 1z02A 446 26.27 1aqjA 421 26.27 c.66.1.27,d.287.1.1 111563,111564 2pspA 106 26.58 g.16.1.1,g.16.1.1 44730,44731 2b4yA 271 26.70 c.31.1.5 127868 1wqkA 42 26.79 1l1dA 152 26.79 b.88.1.3 73452 1zbdB 134 26.83 g.50.1.1 45359 1gh9A 71 26.96 g.41.6.1 45266 1u5mA 73 27.27 g.27.1.2 113043 2j01V 101 27.59 2bn2A 95 27.78 b.9.1.1 23266 1jjdA 55 28.21 g.46.1.1 63116 2oap1 511 28.39 1nwwA 149 28.57 d.17.4.8 86306 2fcwB 80 28.60 g.12.1.1,g.12.1.1 133289,133290 1b0tA 106 28.94 d.58.1.2 38965 2bs2B 241 28.97 a.1.2.1,d.15.4.2 129033,129034 2ivfB 352 29.11 3c5kA 109 29.74 2iv2X 715 29.76 b.52.2.2,c.81.1.1 137714,137715 1dvpA 220 30.46 a.118.9.2,g.50.1.1 19216,45358 2jrpA 81 30.56 1ykfA 352 30.68 b.35.1.2,c.2.1.1 24757,29773 1kte 105 30.86 1jy2P 48 31.12 h.1.8.1 67442 1boeA 47 31.19 g.3.9.1 44187 1vfyA 73 31.88 g.50.1.1 45357 1b8sA 504 32.49 c.3.1.2,d.16.1.1 30335,37866 2h88B 252 32.60 1g0sA 209 32.86 d.113.1.1 60187 1p0hA 318 34.24 d.108.1.1 93866 1wo3A 25 34.63 1q98A 165 35.03 c.47.1.10 96253 1bs9 207 35.03 1th5A 74 35.58 d.52.8.1 119263 1kevA 351 35.94 b.35.1.2,c.2.1.1 24749,29765 1uwvA 433 36.31 b.40.4.12,c.66.1.40 100128,100129 1gmyA 261 36.55 d.3.1.1 76236 2admA 421 37.09 c.66.1.27,d.287.1.1 111611,111612 1tuhA 156 37.45 d.17.4.11 107345 1pedA 351 37.49 b.35.1.2,c.2.1.1 24753,29769 2jrrA 67 38.02 1h7xA 1025 38.22 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2jvmA 80 38.27 1zntA 31 38.30 1p3y1 194 38.40 1pl8A 356 38.49 b.35.1.2,c.2.1.1 94878,94879 1lugA 259 38.49 b.74.1.1 91127 1wo6A 25 38.91 2orwA 184 38.93 2d8aA 348 39.12 1xbtA 193 39.34 c.37.1.24,g.39.1.14 115080,115081 1a1tA 55 39.35 g.40.1.1 45165 2fbwB 252 39.55 1e79G 272 39.64 c.49.2.1 33158 1e1dA 553 39.70 e.26.1.1 43363 1wo7A 25 39.91 2f8lA 344 39.95 c.66.1.45 133132 1knwA 425 40.24 b.49.2.3,c.1.6.1 90969,90970 1p90A 145 40.37 c.55.5.2 94377 1cr8A 42 40.97 g.12.1.1 44613 2eppA 66 41.08 2bx9A 53 41.78 2h2tB 175 42.10 2atrA 138 42.86 d.108.1.1 127305 2gliA 160 42.92 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1jvbA 347 43.12 b.35.1.2,c.2.1.1 77181,77182 1e3jA 352 43.13 b.35.1.2,c.2.1.1 24765,29781 1kbeA 49 43.54 g.49.1.1 68380 2gmgA 105 43.89 1erdA 40 44.02 a.10.1.1 16362 2cdcA 366 44.37 1x3zA 335 44.47 d.3.1.4 121673 1r4yA 136 44.60 d.1.1.3 97056 2ck3G 272 44.61 c.49.2.1 130562 2aqaA 63 45.05 g.41.16.1 127168 2nswA 60 45.26 1jd0A 263 45.71 b.74.1.1 62888 1h8eG 272 45.73 c.49.2.1 60756 2j6aA 141 45.79 1hyiA 65 45.93 g.50.1.1 61406 2i7fA 108 45.97 1mzbA 136 46.09 a.4.5.42 91497 3cxkA 164 46.30 1jk4A 89 46.31 b.9.1.1 77130 2yrkA 55 46.66 1icwA 72 46.72 d.9.1.1 37357 1l8dA 112 46.89 h.4.12.1 73687 1jhdA 396 47.02 b.122.1.3,c.26.1.5 66712,66713 1p0fA 373 47.04 b.35.1.2,c.2.1.1 87642,87643 1vhzA 198 47.07 d.113.1.1 100718 1wqjB 80 47.14 1y7wA 291 48.10 1t3vA 124 48.15 c.55.5.1 112232 1qw2A 102 48.50 d.249.1.1 96456 1zncA 266 49.51 b.74.1.1 27955 2jdiG 273 49.57 c.49.2.1 138272 2r0lB 35 50.50 2gatA 66 50.80 g.39.1.1 45102 2olmA 140 50.89 1o13A 136 51.00 c.55.5.1 80762 1u5kA 244 51.16 b.40.4.13,g.45.1.2 113038,113039 2p57A 144 51.34 1xtaA 221 51.51 1uv0A 149 51.59 d.169.1.1 100028 1jqbA 351 51.84 b.35.1.2,c.2.1.1 77151,77152 3bwwA 307 52.33 1w4rA 195 52.45 2nutB 753 52.56 1fljA 260 52.97 b.74.1.1 27954 1o7nA 449 53.05 b.33.1.2,d.129.3.3 81162,81163 1eyoA 30 53.07 g.3.6.1 44098 2hjhA 354 53.15 2iqjA 134 53.24 1ug1A 92 53.32 b.34.2.1 99360 2owaA 138 53.47 2vil 126 53.66 1a7iA 81 53.75 g.39.1.3,g.39.1.3 45143,45144 2v0cA 878 54.03 2pg3A 232 54.18 1yukB 120 54.27 3ch0A 272 54.79 1kolA 398 54.95 b.35.1.2,c.2.1.1 77474,77475 2fe3A 145 55.62 1de3A 150 55.99 d.1.1.3 36240 1gatA 60 56.67 g.39.1.1 45106 2ohxA 374 56.92 b.35.1.2,c.2.1.1 24669,29685 2bs6A 90 57.13 1l1nA 183 57.51 b.47.1.4 73476 1w4sA 174 57.73 2de6D 115 58.88 1qdpA 42 59.10 g.3.6.2 44113 2fkiA 126 59.22 d.198.3.1 133657 1o9gA 250 60.23 c.66.1.29 86692 1g73C 121 60.30 g.52.1.1 45375 1utyA 187 60.57 b.147.1.1 108036 1keqA 248 61.12 b.74.1.1 72387 1fr7A 260 61.95 b.74.1.1 27828 1ee2A 373 62.02 b.35.1.2,c.2.1.1 24663,29679 2yvpA 182 62.23 1f3hA 142 63.56 g.52.1.1 45381 1g7eA 122 64.05 c.47.1.7 33055 1qorA 327 64.20 b.35.1.2,c.2.1.1 24766,29782 1p9gA 41 64.35 g.3.1.1 104091 1oqqA 106 64.68 d.15.4.1 93422 1yo1A 260 64.98 1qxfA 66 65.44 g.41.8.4 96527 1zkiA 133 66.26 d.38.1.5 125199 1y8qB 640 66.92 2b5wA 357 67.00 1kopA 223 67.63 b.74.1.1 27966 1adwA 123 68.05 b.6.1.1 22893 1lt3A 240 69.05 d.166.1.1 42230 1ovnA 248 69.08 a.71.1.1,c.47.1.7 93602,93603 2q3wA 111 69.92 b.33.1.1 139813 1vjwA 60 71.46 d.58.1.4 38991 1u3wA 374 71.84 b.35.1.2,c.2.1.1 113013,113014 2idaA 102 72.00 1ldjB 90 72.63 g.44.1.1 73850 2poiA 94 73.02 1h7wA 1025 74.15 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2hnuA 81 74.18 2oizD 135 74.49 1h2bA 359 75.18 b.35.1.2,c.2.1.1 90543,90544 2nvaA 372 75.94 1a1gA 90 76.23 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1yuiA 54 76.50 g.37.1.1 45073 1gnlA 544 77.09 e.26.1.1 70287 2g6qA 62 78.09 2fs2A 151 78.56 d.38.1.5 134003 1vj0A 380 78.66 b.35.1.2,c.2.1.1 100786,100787 1bpoA 494 79.23 a.118.1.4,b.69.6.1 19143,27670 1cx4A 305 79.30 b.82.3.2,b.82.3.2 59099,59100 1theA 260 79.86 d.3.1.1 37056 1fu9A 36 80.03 g.37.1.2 45074 2ivfA 976 80.20 3lriA 83 80.39 g.1.1.1 43995 3coxA 507 80.63 c.3.1.2,d.16.1.1 30332,37863 1g9pA 45 80.71 g.3.6.2 65171 1qf8A 182 80.88 g.41.4.1 45212 1mgsA 73 82.88 d.9.1.1 37389 1sdjA 310 83.36 d.21.1.2,d.21.1.2 98807,98808 1afpA 51 83.73 g.26.1.1 44947 2iwgB 181 83.92 2d9kA 75 83.98 1xakA 83 84.79 b.1.24.1 115037 2iafA 151 84.81 d.81.2.1 137157 1bw3A 125 85.28 b.52.1.2 26899 1plfA 72 86.14 d.9.1.1 37373 2volB 180 86.48 2b8tA 223 86.71 c.37.1.24,g.39.1.14 128109,128110 1xx6A 191 86.93 c.37.1.24,g.39.1.14 116139,116140 1k12A 158 87.02 b.18.1.15 71978 1obpA 159 87.09 b.60.1.1 27092 1kj1D 109 88.34 b.78.1.1 68639 1ym0B 27 88.36