# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.1195 g.41.8.1 45315 1jj2Y 73 0.1343 g.41.8.1 63110 1rlyA 60 0.1944 g.41.3.1 104988 3cngA 189 0.3459 1jj2Z 56 0.5076 g.41.8.2 63111 1dl6A 58 0.8860 g.41.3.1 45207 2apoB 60 0.9398 g.41.16.1 127135 1z3aA 168 1.179 c.97.1.2 124396 2qjtA 352 1.186 2a8nA 144 1.459 c.97.1.2 126408 1uaqA 158 1.690 c.97.1.2 88386 1tiyA 164 2.014 c.97.1.2 107012 2e72A 49 2.296 1vk6A 269 2.343 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2ct7A 86 2.351 g.44.1.4 130791 2nx8A 179 2.806 1ltlA 279 2.997 b.40.4.11 84701 3c0dA 119 3.125 1wkqA 164 3.125 c.97.1.2 109393 2b3jA 159 3.274 c.97.1.2 127787 1wwrA 171 3.277 c.97.1.2 121366 2fmlA 273 3.295 a.4.5.68,d.113.1.6 133778,133779 2ausB 60 3.589 2rfkB 53 3.617 1n0zA 45 3.742 g.41.11.1 85247 2j015 60 4.109 2riqA 160 4.295 2gnrA 145 5.280 1s72Z 73 6.134 g.41.8.1 105345 1ptqA 50 6.147 g.49.1.1 45349 1p6oA 161 6.340 c.97.1.2 94185 2qjoA 341 7.279 2hvwA 184 7.799 1v54F 98 8.048 g.41.5.3 100327 2g84A 197 8.052 c.97.1.2 134766 2occF 98 8.244 g.41.5.3 45256 1vq2A 193 9.109 c.97.1.2 114004 1beiA 35 9.888 g.19.1.1 44877 2gbwA 454 10.09 1wdxA 69 10.66 1g38A 393 10.80 c.66.1.27,d.287.1.1 111567,111568 2hf1A 68 11.55 1b71A 191 12.07 a.25.1.1,g.41.5.1 16647,45246 1iroA 54 12.07 g.41.5.1 45223 2ctdA 96 12.21 g.37.1.1,g.37.1.1 130792,130793 2pvxA 54 12.29 3bk3C 67 12.51 2ih2A 421 13.08 1lv3A 68 13.13 g.39.1.9 78231 2bmoA 447 13.75 b.33.1.2,d.129.3.3 128804,128805 6rxnA 45 13.82 g.41.5.1 45222 2csbA 519 14.11 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1g8kA 825 14.18 b.52.2.2,c.81.1.1 26920,35328 2bh0A 208 14.32 1yk4A 52 14.45 1kqfA 1015 14.58 b.52.2.2,c.81.1.1 72871,72872 1ma3A 253 14.73 c.31.1.5 78883 1ptq 50 14.80 1shyB 551 15.19 b.69.12.1,g.16.2.1 105565,105566 2jmoA 80 15.30 2pveA 54 15.84 3c7bA 417 15.93 1xm0A 147 15.99 b.88.1.3 122140 1rb9A 52 16.19 g.41.5.1 45214 2conA 79 16.23 g.41.15.1 130680 1s5aA 150 16.41 d.17.4.10 98525 1x6mA 196 16.79 b.88.1.4 114920 2dsxA 52 16.87 g.41.5.1 131699 1yc5A 246 17.28 c.31.1.5 122910 1g8jA 825 17.57 b.52.2.2,c.81.1.1 26924,35332 1b13A 54 18.33 g.41.5.1 45227 1b2jA 54 18.33 g.41.5.1 45231 1b2oA 54 18.33 g.41.5.1 45233 1h0hA 977 18.85 b.52.2.2,c.81.1.1 76435,76436 1dgsA 667 18.99 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 2cttA 104 19.63 1p91A 269 19.90 c.66.1.33 94378 1brfA 53 19.91 g.41.5.1 45236 1m2kA 249 20.61 c.31.1.5 84754 2ckfA 454 20.96 1bq8A 54 20.99 g.41.5.1 45237 1bq9A 54 20.99 g.41.5.1 45238 1dsvA 31 21.09 g.40.1.1 45174 4gatA 66 22.08 g.39.1.1 45100 2b5lC 222 22.39 1yo8A 634 23.30 1eu1A 780 23.50 b.52.2.2,c.81.1.1 26903,35311 1rb9 53 23.94 1jocA 125 24.87 g.50.1.1,h.1.21.1 66990,66991 1vm9A 111 24.95 b.33.1.1 108886 1iciA 256 25.46 c.31.1.5 62266 2nutA 769 25.66 1dx8A 70 26.91 g.41.5.1 45243 1vqoZ 83 27.49 g.41.8.1 120387 2i13A 190 27.79 k.12.1.1 136964 1sjgA 112 29.03 b.33.1.1 105647 1cl4A 60 29.41 g.40.1.1 45171 2hr7A 486 29.92 1wd2A 60 30.06 g.44.1.1 109232 1j8eA 44 30.12 g.12.1.1 66437 2b1xA 470 31.30 b.33.1.2,d.129.3.3 127675,127676 1uliA 460 31.48 b.33.1.2,d.129.3.3 107921,107922 2jo6A 113 31.59 1sl4A 155 31.79 d.169.1.1 105710 1h98A 78 31.94 d.58.1.2 65743 2d8qA 70 32.85 g.85.1.1 131335 2i5oA 39 34.21 2bngA 149 34.26 2ibtA 421 35.43 c.66.1.27,d.287.1.1 137205,137206 2fiyA 309 35.59 e.59.1.1 133540 1l3yA 41 35.68 g.3.11.6 73558 1aqjA 421 35.87 c.66.1.27,d.287.1.1 111563,111564 1eg9A 449 37.08 b.33.1.2,d.129.3.3 24443,41322 1jy2P 48 37.56 h.1.8.1 67442 1xpaA 122 38.14 a.6.1.2,g.39.1.5 16308,45151 1ajj 37 38.55 1gaxA 862 39.51 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2gb4A 252 40.49 1q1aA 289 41.54 c.31.1.5 95561 7fd1A 106 41.55 d.58.1.2 38953 3c7bB 366 42.92 1mfwA 107 45.56 d.15.11.1 84940 1gntA 553 48.49 e.26.1.1 70290 1o9gA 250 50.55 c.66.1.29 86692 2orwA 184 50.74 1irxA 523 52.09 a.97.1.2,c.26.1.1 71378,71379 2aqaA 63 53.85 g.41.16.1 127168 1xbtA 193 54.00 c.37.1.24,g.39.1.14 115080,115081 1s5pA 235 54.35 c.31.1.5 98569 1qw2A 102 55.06 d.249.1.1 96456 1twfL 70 55.59 g.41.9.2 112737 2admA 421 55.74 c.66.1.27,d.287.1.1 111611,111612 1lkoA 191 55.89 a.25.1.1,g.41.5.1 78063,78064 1cr8A 42 56.85 g.12.1.1 44613 1wjnA 97 57.49 d.15.1.1 114703 1th5A 74 57.96 d.52.8.1 119263 2napA 723 58.00 b.52.2.2,c.81.1.1 26926,35334 1ryt 190 58.33 1ro5A 201 58.56 d.108.1.3 105023 2e4qA 109 58.65 2ba1A 179 59.28 1ryqA 69 59.37 g.41.9.3 105126 1q16A 1247 61.05 b.52.2.2,c.81.1.1 95546,95547 1ajjA 37 61.12 g.12.1.1 44609 3c5kA 109 61.70 1vfyA 73 62.05 g.50.1.1 45357 2baiA 32 62.33 g.87.1.1 128237 1f5yA 85 62.82 g.12.1.1,g.12.1.1 44610,44611 2de6A 392 62.85 b.33.1.2,d.129.3.3 131415,131416 1mzbA 136 63.00 a.4.5.42 91497 1ltsA 185 64.29 d.166.1.1 42229 1mmcA 30 64.69 g.3.1.2 44061 2jvmA 80 64.79 2gliA 160 64.88 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 1kte 105 66.48 2pmzP 48 67.05 1ndoA 449 67.06 b.33.1.2,d.129.3.3 24444,41323 2fcwB 80 67.11 g.12.1.1,g.12.1.1 133289,133290 1y5iA 1246 67.27 b.52.2.2,c.81.1.1 122639,122640 1l5cA 92 67.63 b.9.1.1 73577 2v3vA 723 68.50 1tuhA 156 70.44 d.17.4.11 107345 1npoC 95 70.58 b.9.1.1 23271 1jhdA 396 70.68 b.122.1.3,c.26.1.5 66712,66713 1l8dA 112 70.92 h.4.12.1 73687 2g45A 129 71.38 2f8lA 344 71.84 c.66.1.45 133132 1vqo3 92 72.09 1w4rA 195 72.19 2jrrA 67 72.78 1kzfA 230 73.47 d.108.1.3 73354 2j01V 101 73.88 2yrkA 55 74.72 1u5kA 244 74.94 b.40.4.13,g.45.1.2 113038,113039 1lml 478 75.23 1npoA 95 75.24 b.9.1.1 23270 1wo3A 25 75.49 1vhzA 198 76.64 d.113.1.1 100718 1gh9A 71 76.69 g.41.6.1 45266 2fdn 55 77.21 3bm4A 210 78.00 1l1dA 152 78.54 b.88.1.3 73452 2qkdA 404 79.22 1ykfA 352 79.37 b.35.1.2,c.2.1.1 24757,29773 3bwwA 307 79.71 1zoyB 252 82.07 1ug1A 92 82.75 b.34.2.1 99360 2v2kA 105 82.92 2hldG 278 83.83 1g73C 121 85.06 g.52.1.1 45375 1q98A 165 85.20 c.47.1.10 96253 1ovnA 248 85.45 a.71.1.1,c.47.1.7 93602,93603 1jjdA 55 85.64 g.46.1.1 63116 1boeA 47 86.51 g.3.9.1 44187 2bx9A 53 87.73