# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.02558 g.41.8.1 45315 1jj2Y 73 0.04480 g.41.8.1 63110 1rlyA 60 0.07219 g.41.3.1 104988 1jj2Z 56 0.09527 g.41.8.2 63111 3cngA 189 0.1124 2apoB 60 0.2756 g.41.16.1 127135 1dl6A 58 0.3585 g.41.3.1 45207 2qjtA 352 0.5504 1vk6A 269 0.6048 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1ltlA 279 0.7637 b.40.4.11 84701 1z3aA 168 0.8062 c.97.1.2 124396 2ct7A 86 0.8424 g.44.1.4 130791 2gnrA 145 0.9582 2a8nA 144 0.9889 c.97.1.2 126408 2ausB 60 0.996 2e72A 49 0.998 1uaqA 158 1.165 c.97.1.2 88386 1ptqA 50 1.165 g.49.1.1 45349 1tiyA 164 1.182 c.97.1.2 107012 2fmlA 273 1.191 a.4.5.68,d.113.1.6 133778,133779 2riqA 160 1.216 2j015 60 1.357 2rfkB 53 1.408 2nx8A 179 1.444 1s72Z 73 1.450 g.41.8.1 105345 1wkqA 164 1.501 c.97.1.2 109393 1v54F 98 1.671 g.41.5.3 100327 2b3jA 159 1.713 c.97.1.2 127787 1n0zA 45 2.109 g.41.11.1 85247 1wwrA 171 2.118 c.97.1.2 121366 2occF 98 2.333 g.41.5.3 45256 2gbwA 454 2.504 1ptq 50 2.796 2qjoA 341 3.075 1g38A 393 3.187 c.66.1.27,d.287.1.1 111567,111568 3c0dA 119 3.226 2hf1A 68 3.263 2ih2A 421 3.600 1iroA 54 3.614 g.41.5.1 45223 2cttA 104 3.689 2pvxA 54 3.809 2bmoA 447 3.925 b.33.1.2,d.129.3.3 128804,128805 2hvwA 184 4.348 6rxnA 45 4.373 g.41.5.1 45222 2pveA 54 4.407 1yk4A 52 4.517 1ma3A 253 4.595 c.31.1.5 78883 1lv3A 68 4.661 g.39.1.9 78231 1m2kA 249 4.706 c.31.1.5 84754 2conA 79 4.751 g.41.15.1 130680 1iciA 256 4.757 c.31.1.5 62266 1wdxA 69 4.761 1rb9A 52 4.769 g.41.5.1 45214 2dsxA 52 4.811 g.41.5.1 131699 1beiA 35 5.006 g.19.1.1 44877 1b71A 191 5.052 a.25.1.1,g.41.5.1 16647,45246 1p6oA 161 5.116 c.97.1.2 94185 1b13A 54 5.154 g.41.5.1 45227 1brfA 53 5.224 g.41.5.1 45236 1bq9A 54 5.459 g.41.5.1 45238 1yo8A 634 5.466 1s5aA 150 5.483 d.17.4.10 98525 2ctdA 96 5.524 g.37.1.1,g.37.1.1 130792,130793 1bq8A 54 5.533 g.41.5.1 45237 3bk3C 67 5.536 1b2jA 54 5.684 g.41.5.1 45231 1yc5A 246 6.132 c.31.1.5 122910 1b2oA 54 6.179 g.41.5.1 45233 1dgsA 667 6.207 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 2i13A 190 6.418 k.12.1.1 136964 1rb9 53 6.421 1jocA 125 6.585 g.50.1.1,h.1.21.1 66990,66991 1dsvA 31 6.604 g.40.1.1 45174 1vqoZ 83 6.675 g.41.8.1 120387 2bh0A 208 6.901 2ckfA 454 7.090 1dx8A 70 7.387 g.41.5.1 45243 2g84A 197 7.461 c.97.1.2 134766 1kqfA 1015 7.500 b.52.2.2,c.81.1.1 72871,72872 1x6mA 196 7.557 b.88.1.4 114920 1g8kA 825 8.052 b.52.2.2,c.81.1.1 26920,35328 1uliA 460 8.074 b.33.1.2,d.129.3.3 107921,107922 2ibtA 421 8.206 c.66.1.27,d.287.1.1 137205,137206 1eg9A 449 8.251 b.33.1.2,d.129.3.3 24443,41322 4gatA 66 8.344 g.39.1.1 45100 1xpaA 122 8.513 a.6.1.2,g.39.1.5 16308,45151 2fiyA 309 8.883 e.59.1.1 133540 2csbA 519 8.892 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 2b1xA 470 8.941 b.33.1.2,d.129.3.3 127675,127676 1vq2A 193 9.093 c.97.1.2 114004 1h0hA 977 9.188 b.52.2.2,c.81.1.1 76435,76436 1aqjA 421 9.261 c.66.1.27,d.287.1.1 111563,111564 2jmoA 80 9.366 1q1aA 289 9.850 c.31.1.5 95561 1g8jA 825 10.03 b.52.2.2,c.81.1.1 26924,35332 1eu1A 780 10.16 b.52.2.2,c.81.1.1 26903,35311 3c7bA 417 10.34 1ryqA 69 10.41 g.41.9.3 105126 1p91A 269 10.42 c.66.1.33 94378 2d8qA 70 10.43 g.85.1.1 131335 2bngA 149 10.83 2i5oA 39 11.42 2ba1A 179 11.59 1l1dA 152 11.62 b.88.1.3 73452 2nutA 769 11.68 1cl4A 60 11.73 g.40.1.1 45171 1shyB 551 11.83 b.69.12.1,g.16.2.1 105565,105566 1irxA 523 12.14 a.97.1.2,c.26.1.1 71378,71379 2gb4A 252 13.56 1twfI 122 13.69 g.41.3.1,g.41.3.1 112733,112734 1sl4A 155 13.81 d.169.1.1 105710 1wd2A 60 13.82 g.44.1.1 109232 1qxfA 66 14.17 g.41.8.4 96527 1s5pA 235 14.66 c.31.1.5 98569 1j8eA 44 15.45 g.12.1.1 66437 2de6A 392 15.46 b.33.1.2,d.129.3.3 131415,131416 1ndoA 449 15.46 b.33.1.2,d.129.3.3 24444,41323 2admA 421 15.52 c.66.1.27,d.287.1.1 111611,111612 2cjsC 62 15.65 1gaxA 862 15.67 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1vqo1 57 16.14 3c5kA 109 16.26 1l3yA 41 16.39 g.3.11.6 73558 2qkdA 404 17.19 2b5lC 222 17.24 1y5iA 1246 17.37 b.52.2.2,c.81.1.1 122639,122640 2e4qA 109 17.58 2napA 723 17.63 b.52.2.2,c.81.1.1 26926,35334 1dvpA 220 18.50 a.118.9.2,g.50.1.1 19216,45358 1npoA 95 18.51 b.9.1.1 23270 3c7bB 366 18.81 1npoC 95 18.95 b.9.1.1 23271 1cr8A 42 19.07 g.12.1.1 44613 1vqo3 92 19.44 1lkoA 191 19.92 a.25.1.1,g.41.5.1 78063,78064 1yfuA 174 20.16 b.82.1.20 123094 1ltsA 185 20.57 d.166.1.1 42229 1q16A 1247 20.83 b.52.2.2,c.81.1.1 95546,95547 1lml 478 21.59 1vfyA 73 22.07 g.50.1.1 45357 2bx9A 53 22.24 1ryt 190 22.64 1z02A 446 22.66 1l5cA 92 23.10 b.9.1.1 73577 1ajj 37 23.62 2bn2A 95 23.89 b.9.1.1 23266 2v3vA 723 23.99 1wjnA 97 24.67 d.15.1.1 114703 1u5kA 244 24.72 b.40.4.13,g.45.1.2 113038,113039 2orwA 184 25.00 1gh9A 71 25.07 g.41.6.1 45266 2b4yA 271 25.56 c.31.1.5 127868 2pmzP 48 25.64 1vm9A 111 25.95 b.33.1.1 108886 1l8dA 112 26.17 h.4.12.1 73687 1ro5A 201 26.43 d.108.1.3 105023 1xm0A 147 26.61 b.88.1.3 122140 3cxkA 164 27.11 1xbtA 193 27.14 c.37.1.24,g.39.1.14 115080,115081 2j6aA 141 28.11 1f5yA 85 28.22 g.12.1.1,g.12.1.1 44610,44611 2g45A 129 28.41 1zbdB 134 28.53 g.50.1.1 45359 1q98A 165 28.64 c.47.1.10 96253 1a1tA 55 28.77 g.40.1.1 45165 1jy2P 48 28.91 h.1.8.1 67442 2vpzA 765 29.21 2gmgA 105 29.26 1h98A 78 29.59 d.58.1.2 65743 2f8lA 344 29.81 c.66.1.45 133132 1tuhA 156 29.99 d.17.4.11 107345 2jo6A 113 31.08 2hldG 278 31.09 2fcwB 80 31.39 g.12.1.1,g.12.1.1 133289,133290 2hr7A 486 31.45 1vhzA 198 31.73 d.113.1.1 100718 1o9gA 250 31.85 c.66.1.29 86692 1mzbA 136 31.96 a.4.5.42 91497 1kzfA 230 32.15 d.108.1.3 73354 2owaA 138 32.51 1ajjA 37 32.53 g.12.1.1 44609 2e7zA 727 33.38 1sjgA 112 33.81 b.33.1.1 105647 1th5A 74 33.90 d.52.8.1 119263 1kbeA 49 34.31 g.49.1.1 68380 2gliA 160 34.53 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 2r0lB 35 34.55 2baiA 32 35.21 g.87.1.1 128237 2p57A 144 35.22 2eppA 66 35.53 1w4rA 195 36.05 2ivfB 352 36.40 1jjdA 55 36.60 g.46.1.1 63116 1ee8A 266 36.87 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1x3zA 335 37.09 d.3.1.4 121673 2fe3A 145 37.33 1nwwA 149 38.21 d.17.4.8 86306 2nutB 753 38.91 2pspA 106 38.98 g.16.1.1,g.16.1.1 44730,44731 2olmA 140 39.06 1u5mA 73 39.31 g.27.1.2 113043 1xx6A 191 39.49 c.37.1.24,g.39.1.14 116139,116140 7fd1A 106 39.51 d.58.1.2 38953 2iqjA 134 40.30 2fdn 55 41.03 2oap1 511 41.91 1kte 105 42.40 1p0fA 373 42.73 b.35.1.2,c.2.1.1 87642,87643 2hnuA 81 43.74 2hjhA 354 43.76 1jk4A 89 44.16 b.9.1.1 77130 1twfL 70 44.38 g.41.9.2 112737 1k82A 268 44.93 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1a1gA 90 44.95 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1g0sA 209 45.42 d.113.1.1 60187 1ldjB 90 45.59 g.44.1.1 73850 3bm4A 210 46.04 2cdcA 366 46.16 2b8tA 223 46.87 c.37.1.24,g.39.1.14 128109,128110 2jrrA 67 47.78 1zntA 31 48.28 2nswA 60 48.50 1oqqA 106 48.62 d.15.4.1 93422 1jvbA 347 48.62 b.35.1.2,c.2.1.1 77181,77182 1hdlA 55 48.63 g.68.1.2 65808 1mmcA 30 48.90 g.3.1.2 44061 1b8sA 504 49.01 c.3.1.2,d.16.1.1 30335,37866 1yuiA 54 49.38 g.37.1.1 45073 2gatA 66 49.52 g.39.1.1 45102 2ohxA 374 49.76 b.35.1.2,c.2.1.1 24669,29685 2jrpA 81 50.22 2p35A 259 50.39 1a1hA 90 50.67 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 3bwwA 307 50.78 2jvmA 80 50.83 2d8aA 348 51.66 1e79G 272 51.81 c.49.2.1 33158 1afpA 51 52.10 g.26.1.1 44947 2aqaA 63 52.56 g.41.16.1 127168 2yrkA 55 53.15 1kolA 398 54.16 b.35.1.2,c.2.1.1 77474,77475 1boeA 47 54.27 g.3.9.1 44187 1e3jA 352 54.31 b.35.1.2,c.2.1.1 24765,29781 1bs9 207 55.01 1hyiA 65 55.29 g.50.1.1 61406 1k3xA 262 55.67 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2okcA 445 56.34 1gntA 553 56.45 e.26.1.1 70290 2j01V 101 57.23 1ykfA 352 57.31 b.35.1.2,c.2.1.1 24757,29773 1ee2A 373 57.40 b.35.1.2,c.2.1.1 24663,29679 1p9gA 41 57.68 g.3.1.1 104091 2v0cA 878 57.69 2ck3G 272 57.92 c.49.2.1 130562 1exkA 79 60.10 g.54.1.1 45384 1fqtA 112 60.15 b.33.1.1 24441 1l1zA 274 61.13 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1zoyB 252 61.38 1x6vA 630 61.67 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2iv2X 715 61.74 b.52.2.2,c.81.1.1 137714,137715 2jdiG 273 61.88 c.49.2.1 138272 1p3y1 194 62.48 1gatA 60 62.52 g.39.1.1 45106 1u3wA 374 64.23 b.35.1.2,c.2.1.1 113013,113014 2oizD 135 64.47 1pedA 351 65.20 b.35.1.2,c.2.1.1 24753,29769 2bs6A 90 65.55 1ss3A 50 65.91 g.2.3.1 105975 1bw3A 125 66.25 b.52.1.2 26899 1xakA 83 66.71 b.1.24.1 115037 1wo7A 25 67.04 1jhdA 396 68.20 b.122.1.3,c.26.1.5 66712,66713 2v2kA 105 69.59 1o7nA 449 69.90 b.33.1.2,d.129.3.3 81162,81163 1qdpA 42 70.11 g.3.6.2 44113 1y02A 120 70.42 a.140.2.1,g.50.1.1 116278,116279 1wo6A 25 70.56 1a7hA 86 71.37 b.11.1.1 23600 2gdtA 116 72.09 1vj0A 380 72.20 b.35.1.2,c.2.1.1 100786,100787 1aayA 90 72.36 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1zaaC 87 73.48 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1f3hA 142 73.89 g.52.1.1 45381 1zeiA 53 73.95 g.1.1.1 43963 1w4sA 174 74.45 2nvaA 372 74.89 1kevA 351 75.39 b.35.1.2,c.2.1.1 24749,29765 2cy9A 140 76.98 d.38.1.5 131019 1f8fA 371 77.54 b.35.1.2,c.2.1.1 83246,83247 1yukB 120 78.21 2vrwB 406 78.69 2q1zB 195 79.25 1eo1A 124 80.46 c.55.5.1 33739 1tgrA 52 81.35 g.1.1.1 112427 1dsqA 21 82.34 g.40.1.1 45173 1j8fA 323 82.78 c.31.1.5 62738 2h88B 252 82.93 1ile 821 83.25 1h8eG 272 83.37 c.49.2.1 60756 1h2bA 359 83.60 b.35.1.2,c.2.1.1 90543,90544 2j9uB 76 83.67 1mfwA 107 83.93 d.15.11.1 84940 2volB 180 84.08 1ym0B 27 84.12 1fwqA 123 84.38 b.88.1.1 28394 1d7kA 421 84.62 b.49.2.3,c.1.6.1 26486,28648 2i7fA 108 84.95 1r4yA 136 85.12 d.1.1.3 97056 2poiA 94 85.52 1g73C 121 85.60 g.52.1.1 45375 2b5wA 357 85.63 1lt3A 240 86.25 d.166.1.1 42230 2j7jA 85 86.98 2fkiA 126 87.09 d.198.3.1 133657 1de3A 150 87.26 d.1.1.3 36240 1pl8A 356 87.39 b.35.1.2,c.2.1.1 94878,94879 1ug1A 92 87.93 b.34.2.1 99360 1wo3A 25 88.51