# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jj2Y 73 0.04914 g.41.8.1 63110 1ffkW 73 0.05011 g.41.8.1 45315 1rlyA 60 0.06919 g.41.3.1 104988 3cngA 189 0.0997 1jj2Z 56 0.2427 g.41.8.2 63111 2apoB 60 0.3646 g.41.16.1 127135 1dl6A 58 0.3843 g.41.3.1 45207 2qjtA 352 0.5053 1ltlA 279 0.8170 b.40.4.11 84701 1z3aA 168 0.8387 c.97.1.2 124396 1vk6A 269 0.8752 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2fmlA 273 0.9072 a.4.5.68,d.113.1.6 133778,133779 2e72A 49 0.9252 2a8nA 144 1.024 c.97.1.2 126408 2ct7A 86 1.047 g.44.1.4 130791 2ausB 60 1.301 2rfkB 53 1.484 2riqA 160 1.517 1uaqA 158 1.554 c.97.1.2 88386 2j015 60 1.651 1tiyA 164 1.679 c.97.1.2 107012 2nx8A 179 1.690 1n0zA 45 1.752 g.41.11.1 85247 1wwrA 171 1.852 c.97.1.2 121366 1wkqA 164 1.996 c.97.1.2 109393 3c0dA 119 2.063 2gnrA 145 2.078 2b3jA 159 2.226 c.97.1.2 127787 1ptqA 50 2.483 g.49.1.1 45349 1shyB 551 2.539 b.69.12.1,g.16.2.1 105565,105566 1s72Z 73 2.583 g.41.8.1 105345 2gbwA 454 2.925 2qjoA 341 3.061 1s5aA 150 3.128 d.17.4.10 98525 2bh0A 208 3.320 1wdxA 69 3.331 2hvwA 184 3.464 3bk3C 67 3.612 1lv3A 68 3.716 g.39.1.9 78231 1beiA 35 3.992 g.19.1.1 44877 1v54F 98 4.067 g.41.5.3 100327 2conA 79 4.191 g.41.15.1 130680 1g38A 393 4.479 c.66.1.27,d.287.1.1 111567,111568 1kqfA 1015 4.624 b.52.2.2,c.81.1.1 72871,72872 2hf1A 68 4.734 2occF 98 4.773 g.41.5.3 45256 2ih2A 421 5.018 2bmoA 447 5.057 b.33.1.2,d.129.3.3 128804,128805 1iroA 54 5.132 g.41.5.1 45223 2pvxA 54 5.365 1vq2A 193 5.438 c.97.1.2 114004 1eu1A 780 5.506 b.52.2.2,c.81.1.1 26903,35311 1m2kA 249 5.524 c.31.1.5 84754 1p91A 269 5.550 c.66.1.33 94378 2cttA 104 5.826 6rxnA 45 5.881 g.41.5.1 45222 2bngA 149 5.951 1yk4A 52 6.154 1p6oA 161 6.178 c.97.1.2 94185 1ptq 50 6.290 1ma3A 253 6.418 c.31.1.5 78883 1yo8A 634 6.567 1g8kA 825 6.745 b.52.2.2,c.81.1.1 26920,35328 1dgsA 667 6.783 a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1iciA 256 6.829 c.31.1.5 62266 2g84A 197 6.934 c.97.1.2 134766 1h0hA 977 6.950 b.52.2.2,c.81.1.1 76435,76436 1sl4A 155 7.191 d.169.1.1 105710 1dsvA 31 7.191 g.40.1.1 45174 2dsxA 52 7.209 g.41.5.1 131699 1rb9A 52 7.263 g.41.5.1 45214 2csbA 519 7.297 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1b2jA 54 7.547 g.41.5.1 45231 2ckfA 454 7.548 2pveA 54 7.560 2ctdA 96 7.599 g.37.1.1,g.37.1.1 130792,130793 1b2oA 54 7.695 g.41.5.1 45233 3c7bA 417 7.801 1brfA 53 7.853 g.41.5.1 45236 1b13A 54 7.863 g.41.5.1 45227 1bq8A 54 8.354 g.41.5.1 45237 1cl4A 60 8.380 g.40.1.1 45171 1bq9A 54 8.422 g.41.5.1 45238 1yc5A 246 8.753 c.31.1.5 122910 2napA 723 9.047 b.52.2.2,c.81.1.1 26926,35334 1g8jA 825 9.058 b.52.2.2,c.81.1.1 26924,35332 1b71A 191 9.596 a.25.1.1,g.41.5.1 16647,45246 2b1xA 470 9.97 b.33.1.2,d.129.3.3 127675,127676 1dx8A 70 10.32 g.41.5.1 45243 1rb9 53 10.40 2b5lC 222 10.49 1vqoZ 83 11.01 g.41.8.1 120387 1wd2A 60 11.06 g.44.1.1 109232 2i13A 190 11.21 k.12.1.1 136964 1x6mA 196 11.50 b.88.1.4 114920 2fiyA 309 11.56 e.59.1.1 133540 4gatA 66 11.58 g.39.1.1 45100 1eg9A 449 11.76 b.33.1.2,d.129.3.3 24443,41322 1y5iA 1246 11.80 b.52.2.2,c.81.1.1 122639,122640 2v3vA 723 12.11 2ibtA 421 12.31 c.66.1.27,d.287.1.1 137205,137206 1uliA 460 12.53 b.33.1.2,d.129.3.3 107921,107922 2jmoA 80 12.76 1ltsA 185 12.92 d.166.1.1 42229 1cr8A 42 12.99 g.12.1.1 44613 3c7bB 366 13.01 1jocA 125 13.06 g.50.1.1,h.1.21.1 66990,66991 2de6A 392 13.43 b.33.1.2,d.129.3.3 131415,131416 1ro5A 201 13.47 d.108.1.3 105023 2hr7A 486 13.76 2nutA 769 13.93 1q16A 1247 13.94 b.52.2.2,c.81.1.1 95546,95547 1aqjA 421 14.07 c.66.1.27,d.287.1.1 111563,111564 1l3yA 41 14.59 g.3.11.6 73558 1vm9A 111 14.63 b.33.1.1 108886 1xm0A 147 14.71 b.88.1.3 122140 2i5oA 39 15.93 2gb4A 252 15.94 1kzfA 230 16.05 d.108.1.3 73354 1vhzA 198 16.19 d.113.1.1 100718 1lml 478 16.24 1ajj 37 16.34 1j8eA 44 16.52 g.12.1.1 66437 1gaxA 862 16.59 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 2pmzP 48 16.74 1q1aA 289 16.83 c.31.1.5 95561 1ndoA 449 17.21 b.33.1.2,d.129.3.3 24444,41323 1sjgA 112 17.48 b.33.1.1 105647 1wjnA 97 17.57 d.15.1.1 114703 2e4qA 109 17.66 2j01V 101 17.82 1irxA 523 18.16 a.97.1.2,c.26.1.1 71378,71379 1nwwA 149 18.24 d.17.4.8 86306 1z02A 446 18.51 1twfL 70 18.62 g.41.9.2 112737 1tuhA 156 18.81 d.17.4.11 107345 2ba1A 179 18.82 1xpaA 122 19.03 a.6.1.2,g.39.1.5 16308,45151 1q98A 165 19.12 c.47.1.10 96253 1l1dA 152 19.15 b.88.1.3 73452 2bx9A 53 19.16 2jo6A 113 19.17 2vpzA 765 19.22 2d8qA 70 19.23 g.85.1.1 131335 1hdlA 55 20.34 g.68.1.2 65808 2admA 421 20.83 c.66.1.27,d.287.1.1 111611,111612 2e7zA 727 21.01 1ryqA 69 22.67 g.41.9.3 105126 2cjsC 62 23.06 1ajjA 37 23.12 g.12.1.1 44609 1s5pA 235 23.64 c.31.1.5 98569 1twfI 122 24.43 g.41.3.1,g.41.3.1 112733,112734 3c5kA 109 24.74 1l5cA 92 24.85 b.9.1.1 73577 2baiA 32 25.26 g.87.1.1 128237 1jhdA 396 25.45 b.122.1.3,c.26.1.5 66712,66713 1npoA 95 26.08 b.9.1.1 23270 1yfuA 174 26.75 b.82.1.20 123094 1lkoA 191 26.81 a.25.1.1,g.41.5.1 78063,78064 2gliA 160 27.07 g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1,g.37.1.1 45041,45042,45043,45044,45045 2hjhA 354 27.27 1ryt 190 27.30 2qkdA 404 27.77 1gntA 553 27.87 e.26.1.1 70290 1u5mA 73 27.94 g.27.1.2 113043 2oap1 511 28.17 1fqtA 112 28.52 b.33.1.1 24441 1ee8A 266 28.69 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1jy2P 48 29.18 h.1.8.1 67442 2g45A 129 29.27 2jrpA 81 30.10 1mzbA 136 30.87 a.4.5.42 91497 2iv2X 715 30.89 b.52.2.2,c.81.1.1 137714,137715 1l8dA 112 31.23 h.4.12.1 73687 1vfyA 73 32.91 g.50.1.1 45357 1vqo3 92 32.98 2fcwB 80 33.50 g.12.1.1,g.12.1.1 133289,133290 7fd1A 106 34.06 d.58.1.2 38953 2hldG 278 34.44 1eo1A 124 34.51 c.55.5.1 33739 2orwA 184 34.57 1k3xA 262 35.15 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1npoC 95 35.19 b.9.1.1 23271 1g0sA 209 35.21 d.113.1.1 60187 1h98A 78 35.32 d.58.1.2 65743 1f5yA 85 35.39 g.12.1.1,g.12.1.1 44610,44611 1mmcA 30 35.74 g.3.1.2 44061 2bs6A 90 36.03 2bn2A 95 36.69 b.9.1.1 23266 1k82A 268 37.40 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1gh9A 71 37.55 g.41.6.1 45266 1jjdA 55 37.74 g.46.1.1 63116 2ck3G 272 38.01 c.49.2.1 130562 2fdn 55 38.31 1kbeA 49 38.85 g.49.1.1 68380 2jvmA 80 39.26 2jdiG 273 39.93 c.49.2.1 138272 2jrrA 67 40.54 1bs9 207 40.66 1l1zA 274 41.02 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 3bm4A 210 41.36 1th5A 74 41.38 d.52.8.1 119263 1b8sA 504 41.50 c.3.1.2,d.16.1.1 30335,37866 2iqjA 134 42.00 1t3vA 124 42.81 c.55.5.1 112232 1xbtA 193 43.04 c.37.1.24,g.39.1.14 115080,115081 2owaA 138 43.40 2p57A 144 43.55 1zbdB 134 43.72 g.50.1.1 45359 2j6aA 141 44.03 2fkiA 126 44.29 d.198.3.1 133657 2vil 126 44.31 2cy9A 140 44.67 d.38.1.5 131019 2iafA 151 44.95 d.81.2.1 137157 1o13A 136 44.98 c.55.5.1 80762 1wo6A 25 45.19 2b4yA 271 45.65 c.31.1.5 127868 2ivfB 352 45.80 2eppA 66 46.49 2f8lA 344 46.56 c.66.1.45 133132 1wo7A 25 46.87 2v2kA 105 46.94 3ch0A 272 47.04 1kte 105 47.73 1u5kA 244 47.75 b.40.4.13,g.45.1.2 113038,113039 1ykfA 352 48.12 b.35.1.2,c.2.1.1 24757,29773 2olmA 140 48.22 2pspA 106 50.23 g.16.1.1,g.16.1.1 44730,44731 1e79G 272 50.51 c.49.2.1 33158 1wqkA 42 50.90 1zntA 31 51.05 1o7nA 449 51.12 b.33.1.2,d.129.3.3 81162,81163 1g73C 121 51.23 g.52.1.1 45375 1bw3A 125 51.24 b.52.1.2 26899 1pedA 351 51.68 b.35.1.2,c.2.1.1 24753,29769 3bwwA 307 51.83 1boeA 47 52.90 g.3.9.1 44187 1h8eG 272 52.93 c.49.2.1 60756 1wo3A 25 52.93 1dvpA 220 53.62 a.118.9.2,g.50.1.1 19216,45358 1o9gA 250 53.77 c.66.1.29 86692 2yrkA 55 54.24 2nswA 60 54.24 1knwA 425 54.33 b.49.2.3,c.1.6.1 90969,90970 1x3zA 335 54.59 d.3.1.4 121673 2atrA 138 54.82 d.108.1.1 127305 1a1tA 55 55.14 g.40.1.1 45165 1zkiA 133 56.64 d.38.1.5 125199 1lt3A 240 56.82 d.166.1.1 42230 2aqaA 63 56.99 g.41.16.1 127168 1ym0B 27 57.79 3cxkA 164 58.72 1icwA 72 58.84 d.9.1.1 37357 2nutB 753 58.84 1zoyB 252 58.91 1w4rA 195 59.37 1yukB 120 59.69 2gmgA 105 59.71 1mfwA 107 59.79 d.15.11.1 84940 1kevA 351 60.09 b.35.1.2,c.2.1.1 24749,29765 2cdcA 366 60.56 1oqqA 106 60.58 d.15.4.1 93422 2bs2B 241 61.24 a.1.2.1,d.15.4.2 129033,129034 2r0lB 35 61.52 2d8aA 348 61.89 1w4sA 174 61.96 2h2tB 175 62.35 2i7fA 108 62.65 2geyA 158 63.04 1erdA 40 63.58 a.10.1.1 16362 1vqo1 57 64.02 1r4yA 136 64.53 d.1.1.3 97056 1xakA 83 64.77 b.1.24.1 115037 1jk4A 89 64.97 b.9.1.1 77130 2b8tA 223 65.02 c.37.1.24,g.39.1.14 128109,128110 1pl8A 356 65.06 b.35.1.2,c.2.1.1 94878,94879 1f3hA 142 65.29 g.52.1.1 45381 1fu9A 36 65.47 g.37.1.2 45074 2e74D 179 65.51 b.33.1.1,f.23.12.1 132049,132050 2fe3A 145 65.99 1p3y1 194 67.04 1keoA 154 67.75 b.64.1.1 68534 1jvbA 347 68.61 b.35.1.2,c.2.1.1 77181,77182 1bpoA 494 69.06 a.118.1.4,b.69.6.1 19143,27670 1qxfA 66 69.16 g.41.8.4 96527 2q3wA 111 70.15 b.33.1.1 139813 2oizD 135 70.91 2fs2A 151 70.98 d.38.1.5 134003 2poiA 94 71.11 2q1zB 195 71.79 2ohxA 374 71.80 b.35.1.2,c.2.1.1 24669,29685 2gatA 66 71.86 g.39.1.1 45102 1p0fA 373 71.89 b.35.1.2,c.2.1.1 87642,87643 1xx6A 191 72.08 c.37.1.24,g.39.1.14 116139,116140 1qdpA 42 72.59 g.3.6.2 44113 1de3A 150 72.77 d.1.1.3 36240 1ee2A 373 73.79 b.35.1.2,c.2.1.1 24663,29679 2ovrB 445 73.95 1ss3A 50 74.00 g.2.3.1 105975 1s1dA 331 74.95 b.67.3.1 98344 1p9gA 41 75.03 g.3.1.1 104091 1hyiA 65 75.46 g.50.1.1 61406 1kolA 398 75.47 b.35.1.2,c.2.1.1 77474,77475 2uubR 88 75.80 a.4.8.1 139949 1gmyA 261 75.94 d.3.1.1 76236 1plfA 72 76.00 d.9.1.1 37373 2hnuA 81 76.01 1a15A 67 76.15 d.9.1.1 37451 1frvB 536 76.55 e.18.1.1 43296 1gatA 60 76.97 g.39.1.1 45106 1k8kC 372 77.09 b.69.4.1 68308 2c9aA 259 77.37 b.1.1.4,b.29.1.25 130129,130130 2p35A 259 78.07 1d7kA 421 78.36 b.49.2.3,c.1.6.1 26486,28648 1e3jA 352 78.56 b.35.1.2,c.2.1.1 24765,29781 2iz6A 176 79.51 1wuiL 534 79.70 e.18.1.1 121289 2h88B 252 80.10 2v0cA 878 80.33 2f0xA 148 80.44 d.38.1.5 132673 1sjwA 144 80.47 d.17.4.9 98899 1yr2A 741 81.48 1uv0A 149 82.13 d.169.1.1 100028 1y8qB 640 82.22 3d9tA 97 82.52 1a7hA 86 82.71 b.11.1.1 23600 1f5xA 208 82.77 a.87.1.1 18516 1obpA 159 84.01 b.60.1.1 27092 1jqbA 351 84.07 b.35.1.2,c.2.1.1 77151,77152 1f8fA 371 84.33 b.35.1.2,c.2.1.1 83246,83247 1yuiA 54 84.83 g.37.1.1 45073 1utyA 187 85.78 b.147.1.1 108036 1afpA 51 86.02 g.26.1.1 44947 1tvmA 113 86.18 1qw2A 102 86.53 d.249.1.1 96456 1rjiA 31 87.32 g.3.7.2 97568 2frvB 536 87.48 e.18.1.1 43291 1eyoA 30 87.70 g.3.6.1 44098 1ldjB 90 87.81 g.44.1.1 73850 2diuA 96 88.58 1a1gA 90 88.70 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1k12A 158 89.07 b.18.1.15 71978 2idaA 102 89.23 2vm5A 106 89.39