# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ffkW 73 0.2411 g.41.8.1 45315 1jj2Y 73 0.2822 g.41.8.1 63110 1rlyA 60 0.6993 g.41.3.1 104988 1jj2Z 56 0.8959 g.41.8.2 63111 3cngA 189 0.9097 2qjtA 352 1.041 1dl6A 58 1.664 g.41.3.1 45207 2apoB 60 3.037 g.41.16.1 127135 1vk6A 269 3.340 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1n0zA 45 4.620 g.41.11.1 85247 2qjoA 341 4.638 1s72Z 73 5.920 g.41.8.1 105345 2j015 60 6.544 2cttA 104 7.102 1ma3A 253 7.481 c.31.1.5 78883 1ltlA 279 8.440 b.40.4.11 84701 2e72A 49 8.547 1v54F 98 9.102 g.41.5.3 100327 2ausB 60 9.341 2rfkB 53 10.05 2occF 98 12.49 g.41.5.3 45256 2riqA 160 12.81 1yc5A 246 14.68 c.31.1.5 122910 2csbA 519 15.86 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 2gnrA 145 16.81 1b71A 191 17.61 a.25.1.1,g.41.5.1 16647,45246 1ptqA 50 19.99 g.49.1.1 45349 2fmlA 273 20.68 a.4.5.68,d.113.1.6 133778,133779 1q1aA 289 21.40 c.31.1.5 95561 1eu1A 780 21.92 b.52.2.2,c.81.1.1 26903,35311 1beiA 35 22.29 g.19.1.1 44877 1mfwA 107 22.87 d.15.11.1 84940 4gatA 66 23.32 g.39.1.1 45100 3c7bA 417 23.36 2jmoA 80 25.03 1x6mA 196 26.24 b.88.1.4 114920 1iroA 54 27.36 g.41.5.1 45223 1m2kA 249 28.13 c.31.1.5 84754 1iciA 256 28.18 c.31.1.5 62266 1yk4A 52 28.82 2pvxA 54 30.94 1yo8A 634 32.52 2ih2A 421 32.58 2pveA 54 34.63 1rb9A 52 35.90 g.41.5.1 45214 1g38A 393 36.69 c.66.1.27,d.287.1.1 111567,111568 1vqoZ 83 37.04 g.41.8.1 120387 1wdxA 69 37.46 2dsxA 52 37.61 g.41.5.1 131699 2conA 79 38.14 g.41.15.1 130680 1gaxA 862 38.90 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1b13A 54 41.46 g.41.5.1 45227 1b2oA 54 43.23 g.41.5.1 45233 6rxnA 45 43.36 g.41.5.1 45222 2ct7A 86 44.64 g.44.1.4 130791 1l1dA 152 45.18 b.88.1.3 73452 1dx8A 70 45.36 g.41.5.1 45243 1g0sA 209 45.63 d.113.1.1 60187 1b2jA 54 46.44 g.41.5.1 45231 3c0dA 119 46.60 2pz0A 252 47.36 2nutA 769 48.04 1bq8A 54 48.60 g.41.5.1 45237 1m2dA 110 48.86 c.47.1.11 78476 2hr7A 486 49.28 1wqkA 42 49.92 1bq9A 54 50.83 g.41.5.1 45238 1brfA 53 50.86 g.41.5.1 45236 3ch0A 272 51.11 1ptq 50 51.16 1rb9 53 51.27 1ajj 37 51.42 2ctdA 96 53.83 g.37.1.1,g.37.1.1 130792,130793 1m2bA 110 54.03 c.47.1.11 78474 1k77A 260 58.25 c.1.15.5 72096 1xm0A 147 58.89 b.88.1.3 122140 1l1zA 274 60.23 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1s5pA 235 64.79 c.31.1.5 98569 1icwA 72 64.82 d.9.1.1 37357 1j8eA 44 65.05 g.12.1.1 66437 1l3yA 41 65.61 g.3.11.6 73558 1k82A 268 66.35 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1afpA 51 67.44 g.26.1.1 44947 1utyA 187 69.31 b.147.1.1 108036 1wqjB 80 72.42 2gb4A 252 73.49 2baiA 32 74.36 g.87.1.1 128237 2pmzP 48 76.47 2qkdA 404 77.93 1jhdA 396 78.04 b.122.1.3,c.26.1.5 66712,66713 2poiA 94 79.03 2i13A 190 81.29 k.12.1.1 136964 2b4yA 271 82.72 c.31.1.5 127868 1lv3A 68 83.11 g.39.1.9 78231 2d8qA 70 84.86 g.85.1.1 131335 1boeA 47 85.64 g.3.9.1 44187 1a15A 67 85.95 d.9.1.1 37451 1ajjA 37 86.39 g.12.1.1 44609 1tujA 123 87.19 1wpiA 133 87.82 c.47.1.18 121146 1plfA 72 88.10 d.9.1.1 37373 2ibtA 421 89.52 c.66.1.27,d.287.1.1 137205,137206