# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bcjB 340 3.156 b.69.4.1 128289 2bmoA 447 5.407 b.33.1.2,d.129.3.3 128804,128805 1gotB 340 6.084 b.69.4.1 27648 2gnqA 336 6.098 1tbgA 340 8.202 b.69.4.1 27649 1a0rB 340 8.396 b.69.4.1 27658 1l0qA 391 9.296 b.1.3.1,b.69.2.3 77644,77645 1pguA 615 9.326 b.69.4.1,b.69.4.1 88069,88070 1erjA 393 11.25 b.69.4.1 27660 2pbiB 354 11.56 1eg9A 449 11.87 b.33.1.2,d.129.3.3 24443,41322 1gxrA 337 12.67 b.69.4.1 70722 1dsvA 31 13.74 g.40.1.1 45174 1rlyA 60 14.68 g.41.3.1 104988 2h14A 317 14.74 2ra2A 64 15.14 1ndoA 449 15.44 b.33.1.2,d.129.3.3 24444,41323 1zxtA 76 16.19 3bk3C 67 16.19 2c5uA 375 17.89 1s5pA 235 17.96 c.31.1.5 98569 1uliA 460 19.18 b.33.1.2,d.129.3.3 107921,107922 1fpqA 372 20.91 a.4.5.29,c.66.1.12 59947,59948 2apoB 60 21.70 g.41.16.1 127135 2ovrB 445 22.89 1jj2Z 56 24.06 g.41.8.2 63111 1nexB 464 25.19 a.158.1.1,b.69.4.1 80443,80444 1ptoA 244 25.99 d.166.1.1 42257 1b3aA 67 26.81 d.9.1.1 37410 1lt3A 240 27.07 d.166.1.1 42230 1ri6A 343 27.50 b.69.11.1 97503 2hd5A 359 27.99 2q8rE 66 28.68 1jb0D 138 29.79 d.187.1.1 62823 3c7bB 366 31.60 1o7nA 449 31.65 b.33.1.2,d.129.3.3 81162,81163 1ug1A 92 32.47 b.34.2.1 99360 2gnrA 145 32.51 1ykfA 352 33.62 b.35.1.2,c.2.1.1 24757,29773 1bcpA 235 35.88 d.166.1.1 42255 2b1xA 470 37.78 b.33.1.2,d.129.3.3 127675,127676 1n0zA 45 38.11 g.41.11.1 85247 1unnC 115 38.99 d.240.1.1 99680 1jw9B 249 39.27 c.111.1.1 67377 1korA 400 40.12 c.26.2.1,d.210.1.1 72824,72825 1eqtA 68 40.43 d.9.1.1 37412 1xtcA 194 41.18 d.166.1.1 42259 2j015 60 41.30 1z4rA 168 42.10 d.108.1.1 124444 1pl8A 356 43.87 b.35.1.2,c.2.1.1 94878,94879 1lt4A 247 45.21 d.166.1.1 42231 1lkoA 191 46.54 a.25.1.1,g.41.5.1 78063,78064 2k2dA 79 47.95 2occF 98 49.41 g.41.5.3 45256 2ouiA 360 51.14 1y9aA 360 53.37 3bk2A 562 53.67 3bduA 62 55.13 1ltsA 185 55.43 d.166.1.1 42229 1b71A 191 57.19 a.25.1.1,g.41.5.1 16647,45246 1b5fA 239 57.85 b.50.1.2 26836 1ffkW 73 59.23 g.41.8.1 45315 1kevA 351 60.19 b.35.1.2,c.2.1.1 24749,29765 1qw2A 102 61.93 d.249.1.1 96456 1ld4A 264 63.08 i.6.1.1 77886 1jdpA 441 63.11 c.93.1.1 62906 2yvpA 182 64.06 1z02A 446 66.40 1w2xA 758 68.37 c.14.1.4,c.14.1.4 109134,109135 1v54F 98 68.79 g.41.5.3 100327 1cm9A 74 71.09 d.9.1.1 37405 2pifA 276 74.39 1ca1 370 75.36 1nm1G 125 75.72 d.109.1.1 80653 1svpA 161 76.83 b.47.1.3 26384 2atmA 331 76.96 3bs1A 103 77.13 2q22A 139 78.12 1rz2A 254 79.44 b.100.1.1 105130 1z2kA 109 80.51 1e3jA 352 80.89 b.35.1.2,c.2.1.1 24765,29781 1a88A 275 86.81 c.69.1.12 34707 1ar1B 298 88.28 b.6.1.2,f.17.2.1 23037,43619 1p0hA 318 88.58 d.108.1.1 93866