# List of top-scoring protein chains for T0480.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2zkr2	97	1.209		
1ffkW	73	5.352	g.41.8.1	45315
1pftA	50	6.589	g.41.3.1	45206
1jj2Y	73	13.68	g.41.8.1	63110
1pvmA	184	17.12	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1zinA	217	21.36	c.37.1.1,g.41.2.1	31915,45178
2e72A	49	21.60		
2qh1A	198	21.61		
2aqcA	63	22.20	g.41.16.1	127177
2d3wA	248	23.92		
1n0zA	45	24.91	g.41.11.1	85247
2apoB	60	25.82	g.41.16.1	127135
2em5A	46	29.01		
1r9wA	145	31.67	d.89.1.2	97264
3cngA	189	39.06		
1xyr2	237	41.52		
1dgi2	268	47.37		
2k2pA	85	49.01		
1hxs2	272	50.23		
1vk6A	269	50.31	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1ar72	272	50.35		
3bczA	293	55.12		
3cc2Z	116	55.53		
1blaA	155	56.42	b.42.1.1	25502
1s72Z	73	57.75	g.41.8.1	105345
2qa4Z	92	57.79		
1w6uA	302	57.95	c.2.1.2	114288
1jnsA	92	58.32	d.26.1.1	84185
1vqoZ	83	59.21	g.41.8.1	120387
1pov0	340	65.67		
1meyC	87	66.95	k.12.1.1	46430
1zxtA	76	67.29		
2di0A	71	74.65	a.5.2.4	131521
1lv3A	68	75.98	g.39.1.9	78231
1sq4A	278	76.61	b.82.1.11	98962
1ul5A	88	78.17	g.72.1.1	99539
1iilA	155	83.46	b.42.1.1	62433
1z54A	132	84.27	d.38.1.1	124450
2hf3A	374	88.18	c.55.1.1,c.55.1.1	136373,136374