# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.05839 1q33A 292 0.1579 d.113.1.1 95657 2apoB 60 0.2292 g.41.16.1 127135 1o7nA 449 0.6279 b.33.1.2,d.129.3.3 81162,81163 2ckfA 454 0.6805 1rlyA 60 0.6917 g.41.3.1 104988 2gbwA 454 0.7018 1uliA 460 0.7308 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 0.8963 b.33.1.2,d.129.3.3 128804,128805 2ct7A 86 0.9473 g.44.1.4 130791 1z02A 446 1.243 1fqtA 112 1.584 b.33.1.1 24441 2b1xA 470 2.309 b.33.1.2,d.129.3.3 127675,127676 1p91A 269 2.404 c.66.1.33 94378 3c0dA 119 2.448 1ltlA 279 2.975 b.40.4.11 84701 2qkmB 266 3.201 2de6A 392 3.459 b.33.1.2,d.129.3.3 131415,131416 2e72A 49 3.535 1gnlA 544 4.479 e.26.1.1 70287 1jhdA 396 5.532 b.122.1.3,c.26.1.5 66712,66713 2e4qA 109 5.952 2jo6A 113 7.643 2i7fA 108 8.522 2vqeR 88 8.550 1ss3A 50 8.587 g.2.3.1 105975 1ajjA 37 8.892 g.12.1.1 44609 2de6D 115 9.409 2fiyA 309 9.697 e.59.1.1 133540 2uubR 88 9.95 a.4.8.1 139949 2qtdA 105 10.13 2vpzA 765 10.26 2rfkB 53 10.79 1vm9A 111 10.82 b.33.1.1 108886 2jz8A 87 12.08 1jd5A 124 12.18 g.52.1.1 66544 1ptqA 50 13.16 g.49.1.1 45349 1n0zA 45 13.85 g.41.11.1 85247 2q3wA 111 13.98 b.33.1.1 139813 1b9vA 390 14.22 b.68.1.1 27603 1ptq 50 16.50 2b5lC 222 16.63 2fa8A 105 17.04 c.47.1.23 133185 1vk6A 269 17.06 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2aqaA 63 17.16 g.41.16.1 127168 1j8eA 44 17.41 g.12.1.1 66437 2qjtA 352 18.64 1nscA 390 19.20 b.68.1.1 27591 1h0hA 977 19.22 b.52.2.2,c.81.1.1 76435,76436 1ma3A 253 19.28 c.31.1.5 78883 1eu1A 780 19.52 b.52.2.2,c.81.1.1 26903,35311 3bk3C 67 19.82 2di0A 71 20.91 a.5.2.4 131521 1l5pA 93 21.33 d.15.4.1 73598 2j015 60 21.87 1xx6A 191 22.43 c.37.1.24,g.39.1.14 116139,116140 1y5iA 1246 22.88 b.52.2.2,c.81.1.1 122639,122640 2d9kA 75 23.73 1wwrA 171 24.27 c.97.1.2 121366 6rxnA 45 24.93 g.41.5.1 45222 1cl4A 60 25.18 g.40.1.1 45171 1l3yA 41 26.70 g.3.11.6 73558 1uwmA 106 27.17 d.15.4.1 119763 2napA 723 28.92 b.52.2.2,c.81.1.1 26926,35334 1o13A 136 29.63 c.55.5.1 80762 2v3vA 723 29.91 1r7sA 106 30.31 d.15.4.1 97207 2bt6A 108 30.62 d.15.4.1 129152 1t44G 147 31.24 d.109.1.1 106395 2nx8A 179 31.38 1y8qB 640 31.57 1kqfA 1015 31.83 b.52.2.2,c.81.1.1 72871,72872 1xakA 83 32.51 b.1.24.1 115037 1ayfA 105 32.58 d.15.4.1 37684 1p6oA 161 32.86 c.97.1.2 94185 1xlqA 106 35.32 d.15.4.1 122119 1dvpA 220 35.83 a.118.9.2,g.50.1.1 19216,45358 2gmgA 105 37.66 2ijzA 428 37.88 2oryA 346 38.00 1e6eB 128 40.03 d.15.4.1 59300 1oqqA 106 40.60 d.15.4.1 93422 1z6oA 212 40.61 a.25.1.1 124531 1twfL 70 40.99 g.41.9.2 112737 2pveA 54 41.50 1yk4A 52 41.60 2cihA 183 41.85 1lb3A 182 42.02 a.25.1.1 77873 1yb0A 159 42.14 d.118.1.1 122865 1z6oM 191 43.56 a.25.1.1 124543 2qjoA 341 44.81 1b13A 54 44.84 g.41.5.1 45227 1x6mA 196 45.94 b.88.1.4 114920 1brfA 53 46.05 g.41.5.1 45236 1a8y 367 46.73 2b06A 155 46.94 d.113.1.1 127624 1xpaA 122 49.65 a.6.1.2,g.39.1.5 16308,45151 3bwwA 307 50.61 1rb9A 52 51.13 g.41.5.1 45214 2iv2X 715 51.20 b.52.2.2,c.81.1.1 137714,137715 2gaiA 633 51.24 3cbjA 266 52.03 2jroA 78 52.16 1g38A 393 52.42 c.66.1.27,d.287.1.1 111567,111568 1tg0A 68 53.07 1lml 478 54.03 2pvxA 54 55.24 2e7zA 727 55.68 1dqcA 74 56.20 g.31.1.1 44964 1yuiA 54 56.48 g.37.1.1 45073 2fkiA 126 57.50 d.198.3.1 133657 2j01V 101 57.88 1r03A 182 59.70 a.25.1.1 104675 1jocA 125 59.79 g.50.1.1,h.1.21.1 66990,66991 1wo3A 25 60.10 1a7iA 81 60.67 g.39.1.3,g.39.1.3 45143,45144 1iroA 54 63.11 g.41.5.1 45223 3cngA 189 64.42 1n71A 180 64.51 d.108.1.1 85370 2jrrA 67 65.04 2vccA 891 68.49 2qrdA 137 68.74 1qxfA 66 69.25 g.41.8.4 96527 1rb9 53 69.48 1yfuA 174 69.50 b.82.1.20 123094 2p02A 396 70.48 1s7jA 262 71.05 d.21.1.2 98647 2baiA 32 71.73 g.87.1.1 128237 1pq7A 224 73.08 b.47.1.2 95002 2riqA 160 73.64 1i7hA 111 73.74 d.15.4.1 71122 1beiA 35 74.75 g.19.1.1 44877 1hk8A 605 75.69 c.7.1.3 83540 2i7cA 283 76.89 1wyxA 69 79.07 1rjiA 31 80.16 g.3.7.2 97568 1xubA 298 82.80 d.21.1.2,d.21.1.2 116060,116061 1mdlA 359 83.64 c.1.11.2,d.54.1.1 29247,38891 1v54F 98 83.85 g.41.5.3 100327 2i5oA 39 83.93 1wo7A 25 85.34 1t3vA 124 85.37 c.55.5.1 112232 1mmcA 30 86.24 g.3.1.2 44061