# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.06549 2apoB 60 0.2443 g.41.16.1 127135 1rlyA 60 0.5521 g.41.3.1 104988 1z02A 446 0.5858 1o7nA 449 0.7084 b.33.1.2,d.129.3.3 81162,81163 2bmoA 447 0.8128 b.33.1.2,d.129.3.3 128804,128805 1uliA 460 0.8289 b.33.1.2,d.129.3.3 107921,107922 2ct7A 86 0.8374 g.44.1.4 130791 2ckfA 454 0.8424 2gbwA 454 0.8626 1q33A 292 1.188 d.113.1.1 95657 1p91A 269 1.254 c.66.1.33 94378 1fqtA 112 1.691 b.33.1.1 24441 3c0dA 119 1.990 2de6A 392 2.113 b.33.1.2,d.129.3.3 131415,131416 2b1xA 470 2.162 b.33.1.2,d.129.3.3 127675,127676 1ltlA 279 4.009 b.40.4.11 84701 1gnlA 544 5.090 e.26.1.1 70287 1vm9A 111 5.380 b.33.1.1 108886 2e72A 49 6.018 2qkmB 266 6.177 2e4qA 109 6.190 1jhdA 396 6.272 b.122.1.3,c.26.1.5 66712,66713 2q3wA 111 6.517 b.33.1.1 139813 2de6D 115 7.441 1jd5A 124 7.646 g.52.1.1 66544 2vpzA 765 8.279 2i7fA 108 8.671 2rfkB 53 9.001 1vk6A 269 9.138 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1ptqA 50 10.09 g.49.1.1 45349 1h0hA 977 11.28 b.52.2.2,c.81.1.1 76435,76436 2aqaA 63 11.66 g.41.16.1 127168 2uubR 88 11.69 a.4.8.1 139949 2vqeR 88 12.20 1ptq 50 12.83 1kqfA 1015 13.57 b.52.2.2,c.81.1.1 72871,72872 2qtdA 105 13.59 1n0zA 45 15.40 g.41.11.1 85247 1eu1A 780 15.71 b.52.2.2,c.81.1.1 26903,35311 1y5iA 1246 16.27 b.52.2.2,c.81.1.1 122639,122640 2fa8A 105 16.30 c.47.1.23 133185 1b9vA 390 17.74 b.68.1.1 27603 2fiyA 309 18.45 e.59.1.1 133540 1ma3A 253 18.79 c.31.1.5 78883 2jo6A 113 19.27 2j015 60 19.65 1ajjA 37 21.56 g.12.1.1 44609 2d9kA 75 21.94 1nscA 390 22.40 b.68.1.1 27591 2jz8A 87 22.48 2b5lC 222 23.52 3bk3C 67 24.59 2hf1A 68 24.71 6rxnA 45 25.38 g.41.5.1 45222 1o13A 136 25.77 c.55.5.1 80762 1j8eA 44 26.53 g.12.1.1 66437 1cl4A 60 26.65 g.40.1.1 45171 1l3yA 41 26.69 g.3.11.6 73558 1twfL 70 27.22 g.41.9.2 112737 1tg0A 68 29.10 1l5pA 93 30.72 d.15.4.1 73598 1dvpA 220 31.15 a.118.9.2,g.50.1.1 19216,45358 1xpaA 122 33.78 a.6.1.2,g.39.1.5 16308,45151 2pveA 54 34.55 1brfA 53 34.84 g.41.5.1 45236 3cngA 189 35.82 1yk4A 52 35.85 2riqA 160 36.62 2e7zA 727 37.17 2napA 723 37.33 b.52.2.2,c.81.1.1 26926,35334 2iv2X 715 37.53 b.52.2.2,c.81.1.1 137714,137715 1b13A 54 38.08 g.41.5.1 45227 1ss3A 50 38.15 g.2.3.1 105975 2i7cA 283 38.32 2v3vA 723 38.38 1rb9A 52 38.48 g.41.5.1 45214 2b06A 155 40.99 d.113.1.1 127624 1lml 478 41.61 1x6mA 196 42.68 b.88.1.4 114920 2pvxA 54 43.27 2bt6A 108 43.38 d.15.4.1 129152 1uwmA 106 43.65 d.15.4.1 119763 2oryA 346 44.43 1t44G 147 46.23 d.109.1.1 106395 1qxfA 66 47.00 g.41.8.4 96527 1iroA 54 48.82 g.41.5.1 45223 1n71A 180 49.10 d.108.1.1 85370 1xakA 83 50.06 b.1.24.1 115037 1ayfA 105 50.36 d.15.4.1 37684 1rb9 53 51.08 1s5aA 150 53.57 d.17.4.10 98525 1dqcA 74 55.23 g.31.1.1 44964 1a8y 367 55.34 2qjoA 341 56.77 1mmcA 30 56.89 g.3.1.2 44061 1r7sA 106 58.94 d.15.4.1 97207 1yuiA 54 60.40 g.37.1.1 45073 2qjtA 352 60.43 1oqqA 106 60.66 d.15.4.1 93422 1hk8A 605 61.05 c.7.1.3 83540 1tgsI 56 61.45 g.68.1.1 44706 2di0A 71 61.81 a.5.2.4 131521 1z6oA 212 62.02 a.25.1.1 124531 1e6eB 128 63.51 d.15.4.1 59300 1xx6A 191 64.67 c.37.1.24,g.39.1.14 116139,116140 1xlqA 106 65.70 d.15.4.1 122119 2jrrA 67 65.92 1lv3A 68 66.17 g.39.1.9 78231 2g45A 129 66.19 1vqoZ 83 67.77 g.41.8.1 120387 1jocA 125 68.81 g.50.1.1,h.1.21.1 66990,66991 2uvlA 96 70.11 1g8kA 825 71.03 b.52.2.2,c.81.1.1 26920,35328 2i5oA 39 71.84 1p6oA 161 73.28 c.97.1.2 94185 1xphA 150 76.44 d.169.1.1 122211 2gaiA 633 76.79 1tuhA 156 76.80 d.17.4.11 107345 1pq7A 224 77.89 b.47.1.2 95002 1r03A 182 80.57 a.25.1.1 104675 3bxoA 239 83.18 2ijzA 428 83.47 3c4zA 543 84.80 1lb3A 182 85.61 a.25.1.1 77873 1wo3A 25 85.86 2cihA 183 87.90 1oh0A 131 88.48 d.17.4.3 87004