# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.1214 1q33A 292 0.2089 d.113.1.1 95657 2apoB 60 0.3660 g.41.16.1 127135 1o7nA 449 0.5661 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 0.5938 1uliA 460 0.6033 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 0.6403 2bmoA 447 0.6406 b.33.1.2,d.129.3.3 128804,128805 2ckfA 454 0.6775 1rlyA 60 1.058 g.41.3.1 104988 1fqtA 112 1.521 b.33.1.1 24441 2ct7A 86 1.623 g.44.1.4 130791 2b1xA 470 1.749 b.33.1.2,d.129.3.3 127675,127676 2de6A 392 1.762 b.33.1.2,d.129.3.3 131415,131416 1ltlA 279 2.423 b.40.4.11 84701 1p91A 269 3.664 c.66.1.33 94378 2qkmB 266 3.759 2e4qA 109 3.878 3c0dA 119 4.396 2i7fA 108 4.578 2qtdA 105 4.716 2e72A 49 6.094 1ptqA 50 6.278 g.49.1.1 45349 1ptq 50 8.107 1vk6A 269 8.144 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1jhdA 396 9.339 b.122.1.3,c.26.1.5 66712,66713 1ma3A 253 11.81 c.31.1.5 78883 1eu1A 780 12.03 b.52.2.2,c.81.1.1 26903,35311 2d9kA 75 12.24 1ss3A 50 12.55 g.2.3.1 105975 1n0zA 45 12.60 g.41.11.1 85247 1vm9A 111 13.25 b.33.1.1 108886 1gnlA 544 13.91 e.26.1.1 70287 2jz8A 87 14.53 2vpzA 765 14.69 1b9vA 390 14.70 b.68.1.1 27603 1lml 478 15.47 2fiyA 309 16.07 e.59.1.1 133540 1jd5A 124 16.85 g.52.1.1 66544 2de6D 115 19.06 2vqeR 88 19.22 1xakA 83 20.63 b.1.24.1 115037 2jo6A 113 20.66 1o13A 136 21.39 c.55.5.1 80762 1y5iA 1246 21.54 b.52.2.2,c.81.1.1 122639,122640 1h0hA 977 21.81 b.52.2.2,c.81.1.1 76435,76436 1yvoA 172 22.45 d.108.1.1 124106 1kqfA 1015 23.06 b.52.2.2,c.81.1.1 72871,72872 1xpaA 122 23.14 a.6.1.2,g.39.1.5 16308,45151 1j8eA 44 23.59 g.12.1.1 66437 1s5aA 150 24.11 d.17.4.10 98525 2fa8A 105 24.44 c.47.1.23 133185 1yfuA 174 24.51 b.82.1.20 123094 2q3wA 111 24.61 b.33.1.1 139813 1nscA 390 24.86 b.68.1.1 27591 2qjtA 352 25.21 1twfL 70 25.65 g.41.9.2 112737 1ajjA 37 25.71 g.12.1.1 44609 1x6mA 196 25.90 b.88.1.4 114920 2riqA 160 25.99 1qxfA 66 26.29 g.41.8.4 96527 1xx6A 191 26.39 c.37.1.24,g.39.1.14 116139,116140 3cngA 189 26.63 1t44G 147 26.88 d.109.1.1 106395 2uubR 88 27.26 a.4.8.1 139949 1dvpA 220 27.30 a.118.9.2,g.50.1.1 19216,45358 2jrrA 67 27.72 6rxnA 45 28.16 g.41.5.1 45222 2nx8A 179 30.24 2jroA 78 30.94 1pq7A 224 31.10 b.47.1.2 95002 2hf1A 68 31.17 1wwrA 171 31.32 c.97.1.2 121366 2pveA 54 31.78 1rb9A 52 31.91 g.41.5.1 45214 1g8kB 133 33.11 b.33.1.1 24435 1g38A 393 33.28 c.66.1.27,d.287.1.1 111567,111568 1hk8A 605 33.41 c.7.1.3 83540 1tuhA 156 33.84 d.17.4.11 107345 1brfA 53 34.27 g.41.5.1 45236 2v3vA 723 34.51 2bngA 149 34.88 1b13A 54 35.13 g.41.5.1 45227 2cs7A 55 35.27 d.9.2.1 130748 2iv2X 715 36.02 b.52.2.2,c.81.1.1 137714,137715 1cl4A 60 36.97 g.40.1.1 45171 1yk4A 52 38.32 1l3yA 41 38.46 g.3.11.6 73558 2qjoA 341 38.72 2aqaA 63 38.81 g.41.16.1 127168 2j015 60 39.73 2b5lC 222 41.47 2gaiA 633 42.23 2pvxA 54 42.59 2di0A 71 42.71 a.5.2.4 131521 2b06A 155 42.79 d.113.1.1 127624 1o8rA 94 42.83 d.234.1.1 86677 1nwwA 149 43.73 d.17.4.8 86306 1jocA 125 44.31 g.50.1.1,h.1.21.1 66990,66991 1iroA 54 44.41 g.41.5.1 45223 1r7sA 106 44.86 d.15.4.1 97207 1yuiA 54 45.92 g.37.1.1 45073 1sjwA 144 46.33 d.17.4.9 98899 1rb9 53 47.96 2e7zA 727 48.17 1wyxA 69 48.21 2conA 79 48.45 g.41.15.1 130680 1jm1A 204 49.23 b.33.1.1 71745 2fkiA 126 49.23 d.198.3.1 133657 1z6oM 191 50.09 a.25.1.1 124543 1lv3A 68 50.64 g.39.1.9 78231 1xphA 150 51.15 d.169.1.1 122211 2cihA 183 51.36 1vfyA 73 51.38 g.50.1.1 45357 2napA 723 51.43 b.52.2.2,c.81.1.1 26926,35334 1eo1A 124 54.78 c.55.5.1 33739 1xmtA 103 55.63 d.108.1.1 115561 1xlqA 106 60.55 d.15.4.1 122119 2bt6A 108 60.89 d.15.4.1 129152 1tg0A 68 61.38 3bidA 64 62.22 1ayfA 105 63.01 d.15.4.1 37684 1v54F 98 63.56 g.41.5.3 100327 1uwmA 106 64.38 d.15.4.1 119763 1gp0A 143 67.70 b.64.1.1 70300 2qrdA 137 67.91 2e6fA 314 71.60 3bk3C 67 72.15 2a31A 223 72.77 b.47.1.2 126068 1r03A 182 72.82 a.25.1.1 104675 1l5pA 93 72.85 d.15.4.1 73598 2d8qA 70 73.35 g.85.1.1 131335 2i5oA 39 73.50 2ih2A 421 74.51 1vqoZ 83 74.82 g.41.8.1 120387 1rfs 139 75.12 1lb6A 160 75.17 b.8.1.1 73798 1a0jA 223 75.70 b.47.1.2 26002 1lb3A 182 76.73 a.25.1.1 77873 1h9hE 223 78.14 b.47.1.2 103810 1a8y 367 78.51 1a7iA 81 78.65 g.39.1.3,g.39.1.3 45143,45144 1z6oA 212 78.75 a.25.1.1 124531 1oh0A 131 80.80 d.17.4.3 87004 1n71A 180 81.50 d.108.1.1 85370 3cxkA 164 82.03 2p02A 396 82.34 3c61A 314 82.84 1s9rA 410 84.42 d.126.1.4 98758 1y8qB 640 84.97 1e5pA 151 86.26 b.60.1.1 59272 2g1lA 104 86.69 b.26.1.2 134520