# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.04259 2apoB 60 0.2480 g.41.16.1 127135 1q33A 292 0.2661 d.113.1.1 95657 1rlyA 60 0.6136 g.41.3.1 104988 1o7nA 449 0.6230 b.33.1.2,d.129.3.3 81162,81163 2gbwA 454 0.7371 1uliA 460 0.7371 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 0.7694 b.33.1.2,d.129.3.3 128804,128805 2ckfA 454 0.8351 2ct7A 86 0.9331 g.44.1.4 130791 1z02A 446 0.9555 1fqtA 112 1.158 b.33.1.1 24441 3c0dA 119 2.274 1p91A 269 2.308 c.66.1.33 94378 2b1xA 470 2.459 b.33.1.2,d.129.3.3 127675,127676 2de6A 392 2.643 b.33.1.2,d.129.3.3 131415,131416 2qkmB 266 2.948 1vm9A 111 3.637 b.33.1.1 108886 1ltlA 279 4.098 b.40.4.11 84701 1jhdA 396 4.601 b.122.1.3,c.26.1.5 66712,66713 2e4qA 109 5.054 2rfkB 53 5.675 2qtdA 105 7.048 2de6D 115 7.180 1ajjA 37 7.342 g.12.1.1 44609 2e72A 49 7.587 1gnlA 544 8.253 e.26.1.1 70287 1vk6A 269 8.993 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2fiyA 309 9.376 e.59.1.1 133540 1ma3A 253 9.829 c.31.1.5 78883 1jd5A 124 10.02 g.52.1.1 66544 2fa8A 105 10.85 c.47.1.23 133185 1eu1A 780 11.48 b.52.2.2,c.81.1.1 26903,35311 2i7fA 108 11.84 1ptqA 50 12.61 g.49.1.1 45349 1y5iA 1246 12.80 b.52.2.2,c.81.1.1 122639,122640 1n0zA 45 13.31 g.41.11.1 85247 2jz8A 87 13.67 1j8eA 44 13.79 g.12.1.1 66437 2aqaA 63 13.85 g.41.16.1 127168 1ss3A 50 13.95 g.2.3.1 105975 2vpzA 765 14.08 1dvpA 220 15.75 a.118.9.2,g.50.1.1 19216,45358 2q3wA 111 15.83 b.33.1.1 139813 1g38A 393 18.73 c.66.1.27,d.287.1.1 111567,111568 1ptq 50 18.84 2qjtA 352 20.60 1wwrA 171 22.01 c.97.1.2 121366 2di0A 71 22.02 a.5.2.4 131521 1twfL 70 23.06 g.41.9.2 112737 2b5lC 222 23.07 2jo6A 113 23.67 1l3yA 41 23.70 g.3.11.6 73558 2d9kA 75 25.46 2vqeR 88 25.60 2j015 60 25.70 2nx8A 179 25.95 1xx6A 191 26.60 c.37.1.24,g.39.1.14 116139,116140 2gaiA 633 27.31 1o8rA 94 27.34 d.234.1.1 86677 1b9vA 390 28.77 b.68.1.1 27603 1l5pA 93 29.43 d.15.4.1 73598 2yx6A 121 30.28 2uubR 88 30.78 a.4.8.1 139949 2bt6A 108 31.56 d.15.4.1 129152 2v3vA 723 31.95 6rxnA 45 33.79 g.41.5.1 45222 3bk3C 67 34.78 1ayfA 105 35.14 d.15.4.1 37684 2riqA 160 36.97 2qjoA 341 38.72 1cl4A 60 39.89 g.40.1.1 45171 1h0hA 977 40.89 b.52.2.2,c.81.1.1 76435,76436 1a8y 367 41.05 1jocA 125 41.91 g.50.1.1,h.1.21.1 66990,66991 2jrrA 67 42.12 1tg0A 68 42.46 2ih2A 421 43.26 1uwmA 106 43.68 d.15.4.1 119763 1r7sA 106 43.83 d.15.4.1 97207 2pveA 54 44.51 1p6oA 161 45.34 c.97.1.2 94185 1e6eB 128 45.53 d.15.4.1 59300 2cs7A 55 45.63 d.9.2.1 130748 1dqcA 74 45.90 g.31.1.1 44964 3cngA 189 46.96 1xpaA 122 47.11 a.6.1.2,g.39.1.5 16308,45151 2napA 723 47.47 b.52.2.2,c.81.1.1 26926,35334 1b13A 54 48.91 g.41.5.1 45227 1oqqA 106 49.13 d.15.4.1 93422 1kqfA 1015 50.17 b.52.2.2,c.81.1.1 72871,72872 1nscA 390 50.39 b.68.1.1 27591 1x6mA 196 50.47 b.88.1.4 114920 1t44G 147 50.68 d.109.1.1 106395 1n71A 180 50.69 d.108.1.1 85370 1qxfA 66 50.73 g.41.8.4 96527 1rb9A 52 52.08 g.41.5.1 45214 1lml 478 52.69 1g8kA 825 52.99 b.52.2.2,c.81.1.1 26920,35328 1xlqA 106 53.29 d.15.4.1 122119 1brfA 53 53.84 g.41.5.1 45236 1yuiA 54 54.23 g.37.1.1 45073 1hk8A 605 54.83 c.7.1.3 83540 1yk4A 52 55.46 1vfyA 73 55.66 g.50.1.1 45357 3bidA 64 57.40 3bwwA 307 58.61 2pvxA 54 58.95 1o13A 136 60.84 c.55.5.1 80762 2jroA 78 60.93 1iroA 54 62.06 g.41.5.1 45223 2conA 79 67.57 g.41.15.1 130680 2oryA 346 69.07 1rb9 53 69.26 2ijzA 428 71.11 2i7cA 283 72.15 2qkdA 404 72.76 1y8qB 640 75.05 2i5oA 39 75.84 1oh0A 131 79.38 d.17.4.3 87004 1lv3A 68 80.22 g.39.1.9 78231 2iv2X 715 80.44 b.52.2.2,c.81.1.1 137714,137715 1gp0A 143 80.48 b.64.1.1 70300 1a7iA 81 81.41 g.39.1.3,g.39.1.3 45143,45144 2gmgA 105 81.65 1lb6A 160 81.69 b.8.1.1 73798 1s5aA 150 82.27 d.17.4.10 98525 1z6oM 191 83.31 a.25.1.1 124543 1lb3A 182 83.36 a.25.1.1 77873 2poiA 94 84.22 1tgsI 56 84.47 g.68.1.1 44706 1l8dA 112 84.84 h.4.12.1 73687 1z6oA 212 85.48 a.25.1.1 124531 2g45A 129 85.93 2cihA 183 87.16 1yb0A 159 87.34 d.118.1.1 122865 1rjiA 31 88.24 g.3.7.2 97568 2vm5A 106 88.37 2hf1A 68 88.44 1jy2P 48 88.83 h.1.8.1 67442 1v47A 349 89.20 b.122.1.3,c.26.1.5 100292,100293