# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.05327 1q33A 292 0.2306 d.113.1.1 95657 2apoB 60 0.2785 g.41.16.1 127135 1rlyA 60 0.5413 g.41.3.1 104988 2ct7A 86 0.6829 g.44.1.4 130791 1o7nA 449 0.7098 b.33.1.2,d.129.3.3 81162,81163 2gbwA 454 0.8525 2bmoA 447 0.9168 b.33.1.2,d.129.3.3 128804,128805 1uliA 460 0.9410 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 0.9822 1z02A 446 1.327 1fqtA 112 2.051 b.33.1.1 24441 1p91A 269 2.561 c.66.1.33 94378 2b1xA 470 2.968 b.33.1.2,d.129.3.3 127675,127676 1jhdA 396 3.274 b.122.1.3,c.26.1.5 66712,66713 1ltlA 279 3.723 b.40.4.11 84701 2de6A 392 4.271 b.33.1.2,d.129.3.3 131415,131416 3c0dA 119 5.096 2e72A 49 5.525 2qkmB 266 6.199 2vpzA 765 6.426 1gnlA 544 6.673 e.26.1.1 70287 1jd5A 124 6.700 g.52.1.1 66544 1eu1A 780 7.025 b.52.2.2,c.81.1.1 26903,35311 2fa8A 105 8.032 c.47.1.23 133185 1ma3A 253 8.039 c.31.1.5 78883 1y5iA 1246 8.617 b.52.2.2,c.81.1.1 122639,122640 1vk6A 269 9.008 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2aqaA 63 9.689 g.41.16.1 127168 2jz8A 87 10.01 1vm9A 111 10.20 b.33.1.1 108886 1ptqA 50 10.86 g.49.1.1 45349 2e4qA 109 10.92 2b5lC 222 12.03 1n0zA 45 12.89 g.41.11.1 85247 2rfkB 53 13.18 2de6D 115 14.02 1h0hA 977 14.07 b.52.2.2,c.81.1.1 76435,76436 1ptq 50 15.41 2v3vA 723 15.62 1ajjA 37 16.25 g.12.1.1 44609 1dvpA 220 16.49 a.118.9.2,g.50.1.1 19216,45358 1wwrA 171 16.84 c.97.1.2 121366 2qtdA 105 16.91 2jo6A 113 17.76 1o8rA 94 18.04 d.234.1.1 86677 1xx6A 191 18.80 c.37.1.24,g.39.1.14 116139,116140 2fiyA 309 19.71 e.59.1.1 133540 1ss3A 50 19.82 g.2.3.1 105975 2j015 60 20.08 1twfL 70 20.10 g.41.9.2 112737 2i7fA 108 21.50 2d9kA 75 22.26 1l3yA 41 22.38 g.3.11.6 73558 1kqfA 1015 22.54 b.52.2.2,c.81.1.1 72871,72872 2nx8A 179 23.29 2q3wA 111 23.88 b.33.1.1 139813 2napA 723 24.06 b.52.2.2,c.81.1.1 26926,35334 2gaiA 633 24.35 1tg0A 68 24.37 2vqeR 88 26.27 1l5pA 93 27.21 d.15.4.1 73598 1cl4A 60 28.97 g.40.1.1 45171 2gmgA 105 30.42 1a8y 367 31.13 1hk8A 605 31.78 c.7.1.3 83540 2bt6A 108 31.99 d.15.4.1 129152 1lml 478 33.03 2ijzA 428 33.11 6rxnA 45 33.23 g.41.5.1 45222 1b9vA 390 34.71 b.68.1.1 27603 1p6oA 161 34.72 c.97.1.2 94185 1ayfA 105 34.77 d.15.4.1 37684 1j8eA 44 34.99 g.12.1.1 66437 1g8kA 825 35.61 b.52.2.2,c.81.1.1 26920,35328 1r7sA 106 36.80 d.15.4.1 97207 2jrrA 67 37.73 1n71A 180 38.10 d.108.1.1 85370 2riqA 160 38.77 1xpaA 122 38.77 a.6.1.2,g.39.1.5 16308,45151 2di0A 71 39.49 a.5.2.4 131521 2uubR 88 39.97 a.4.8.1 139949 2i7cA 283 40.16 1x6mA 196 40.18 b.88.1.4 114920 1xakA 83 40.70 b.1.24.1 115037 1uwmA 106 41.36 d.15.4.1 119763 1e6eB 128 43.53 d.15.4.1 59300 2iv2X 715 43.76 b.52.2.2,c.81.1.1 137714,137715 2pveA 54 44.51 1g38A 393 44.77 c.66.1.27,d.287.1.1 111567,111568 1xlqA 106 45.23 d.15.4.1 122119 2qjoA 341 46.22 1oqqA 106 49.06 d.15.4.1 93422 1jocA 125 49.14 g.50.1.1,h.1.21.1 66990,66991 1b13A 54 50.31 g.41.5.1 45227 3bk3C 67 51.05 1rb9A 52 51.19 g.41.5.1 45214 1yk4A 52 52.24 1brfA 53 52.98 g.41.5.1 45236 2qjtA 352 53.64 2pvxA 54 55.34 1nscA 390 56.73 b.68.1.1 27591 1dqcA 74 56.82 g.31.1.1 44964 1yuiA 54 57.46 g.37.1.1 45073 2g45A 129 61.04 2oryA 346 61.69 2j01V 101 62.47 3cngA 189 62.51 1iroA 54 63.70 g.41.5.1 45223 2qkdA 404 64.37 1yvoA 172 65.41 d.108.1.1 124106 2e7zA 727 65.43 1pq7A 224 67.49 b.47.1.2 95002 2yxxA 386 68.18 1qf8A 182 68.54 g.41.4.1 45212 2i5oA 39 68.94 2poiA 94 69.04 1o13A 136 70.29 c.55.5.1 80762 1mmcA 30 71.27 g.3.1.2 44061 1x7yA 400 72.23 c.36.1.11 114944 1yb0A 159 73.79 d.118.1.1 122865 1rb9 53 74.06 2b06A 155 75.18 d.113.1.1 127624 1rjiA 31 75.29 g.3.7.2 97568 2baiA 32 75.43 g.87.1.1 128237 2vm5A 106 76.04 2qwwA 154 76.42 2p02A 396 77.03 3bwwA 307 77.49 3c5kA 109 78.19 2conA 79 79.09 g.41.15.1 130680 2hf1A 68 80.19 1a7iA 81 80.40 g.39.1.3,g.39.1.3 45143,45144 1yfuA 174 81.47 b.82.1.20 123094 3bidA 64 81.97 1wyxA 69 81.99 2ih2A 421 83.02 1qxfA 66 83.43 g.41.8.4 96527 2jroA 78 83.87 2iwgB 181 84.68 1vfyA 73 85.08 g.50.1.1 45357 2cs7A 55 85.18 d.9.2.1 130748 1l8dA 112 85.88 h.4.12.1 73687 2uvlA 96 86.16 1m2dA 110 87.17 c.47.1.11 78476 1g73C 121 88.22 g.52.1.1 45375