# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.07618 1q33A 292 0.3051 d.113.1.1 95657 2apoB 60 0.4062 g.41.16.1 127135 1rlyA 60 0.7145 g.41.3.1 104988 2ct7A 86 0.9809 g.44.1.4 130791 1o7nA 449 1.587 b.33.1.2,d.129.3.3 81162,81163 2gbwA 454 1.643 2bmoA 447 1.941 b.33.1.2,d.129.3.3 128804,128805 1uliA 460 1.944 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 2.019 1z02A 446 2.808 2qkmB 266 3.250 1ltlA 279 3.523 b.40.4.11 84701 1fqtA 112 3.761 b.33.1.1 24441 1jhdA 396 4.893 b.122.1.3,c.26.1.5 66712,66713 1p91A 269 4.924 c.66.1.33 94378 1gnlA 544 5.827 e.26.1.1 70287 3c0dA 119 6.137 2b1xA 470 7.028 b.33.1.2,d.129.3.3 127675,127676 2de6A 392 7.308 b.33.1.2,d.129.3.3 131415,131416 2e72A 49 9.403 1ma3A 253 9.405 c.31.1.5 78883 2aqaA 63 9.427 g.41.16.1 127168 1wwrA 171 9.673 c.97.1.2 121366 2fiyA 309 10.08 e.59.1.1 133540 2fa8A 105 10.26 c.47.1.23 133185 2nx8A 179 10.32 1jd5A 124 11.12 g.52.1.1 66544 2vpzA 765 11.32 1y5iA 1246 11.60 b.52.2.2,c.81.1.1 122639,122640 2jz8A 87 11.75 1eu1A 780 12.47 b.52.2.2,c.81.1.1 26903,35311 1vm9A 111 13.09 b.33.1.1 108886 1ajjA 37 13.76 g.12.1.1 44609 2di0A 71 13.81 a.5.2.4 131521 1n0zA 45 15.20 g.41.11.1 85247 1vk6A 269 15.36 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1o8rA 94 15.42 d.234.1.1 86677 1ss3A 50 15.48 g.2.3.1 105975 1ptqA 50 15.76 g.49.1.1 45349 1p6oA 161 16.87 c.97.1.2 94185 2e4qA 109 17.53 2qtdA 105 18.43 2rfkB 53 19.72 2de6D 115 21.14 1xx6A 191 21.27 c.37.1.24,g.39.1.14 116139,116140 2b5lC 222 21.31 1g38A 393 21.79 c.66.1.27,d.287.1.1 111567,111568 1dvpA 220 22.73 a.118.9.2,g.50.1.1 19216,45358 1ptq 50 22.92 1a8y 367 24.08 1h0hA 977 24.73 b.52.2.2,c.81.1.1 76435,76436 2j015 60 24.76 2jo6A 113 24.88 2qjtA 352 25.67 2v3vA 723 26.88 1l3yA 41 27.80 g.3.11.6 73558 2i7fA 108 29.56 2gaiA 633 30.70 2bt6A 108 30.77 d.15.4.1 129152 1yb0A 159 30.99 d.118.1.1 122865 6rxnA 45 31.14 g.41.5.1 45222 2d9kA 75 32.15 2q3wA 111 32.52 b.33.1.1 139813 1ayfA 105 33.61 d.15.4.1 37684 1l5pA 93 34.81 d.15.4.1 73598 1tg0A 68 37.20 2napA 723 37.47 b.52.2.2,c.81.1.1 26926,35334 2gmgA 105 37.71 1r7sA 106 38.96 d.15.4.1 97207 1j8eA 44 38.98 g.12.1.1 66437 1twfL 70 39.30 g.41.9.2 112737 2qjoA 341 40.21 1kqfA 1015 40.23 b.52.2.2,c.81.1.1 72871,72872 2pveA 54 43.05 1cl4A 60 43.30 g.40.1.1 45171 1uwmA 106 44.00 d.15.4.1 119763 1lml 478 44.03 1e6eB 128 44.97 d.15.4.1 59300 2ih2A 421 45.66 1jocA 125 46.55 g.50.1.1,h.1.21.1 66990,66991 1rb9A 52 47.56 g.41.5.1 45214 1b13A 54 48.78 g.41.5.1 45227 2ijzA 428 48.84 1xpaA 122 48.87 a.6.1.2,g.39.1.5 16308,45151 3bwwA 307 49.06 1hk8A 605 49.90 c.7.1.3 83540 2vqeR 88 50.48 2pvxA 54 50.56 1yk4A 52 50.66 2jrrA 67 52.22 2riqA 160 52.45 1oqqA 106 53.17 d.15.4.1 93422 1brfA 53 53.74 g.41.5.1 45236 1z6oA 212 53.90 a.25.1.1 124531 1b9vA 390 54.09 b.68.1.1 27603 1xlqA 106 54.99 d.15.4.1 122119 1g8kA 825 55.57 b.52.2.2,c.81.1.1 26920,35328 1lb3A 182 56.47 a.25.1.1 77873 1z6oM 191 56.70 a.25.1.1 124543 2g84A 197 57.61 c.97.1.2 134766 1xakA 83 60.07 b.1.24.1 115037 1yvoA 172 60.77 d.108.1.1 124106 1yuiA 54 60.91 g.37.1.1 45073 1iroA 54 62.41 g.41.5.1 45223 1r03A 182 63.52 a.25.1.1 104675 2i7cA 283 65.70 2b3jA 159 65.78 c.97.1.2 127787 1rb9 53 69.53 1x6mA 196 69.58 b.88.1.4 114920 2p02A 396 71.22 2qkdA 404 71.91 3bk3C 67 72.10 1rjiA 31 74.48 g.3.7.2 97568 2g45A 129 74.87 2cihA 183 75.21 1jy2P 48 76.71 h.1.8.1 67442 2oryA 346 76.98 3cbjA 266 77.37 1dqcA 74 78.00 g.31.1.1 44964 2iv2X 715 78.60 b.52.2.2,c.81.1.1 137714,137715 1y8qB 640 80.33 1vfyA 73 81.22 g.50.1.1 45357 2hf1A 68 82.68 2j01V 101 83.25 2uubR 88 83.74 a.4.8.1 139949 1qxfA 66 85.05 g.41.8.4 96527 1mmcA 30 86.14 g.3.1.2 44061 1jy2N 53 86.17 h.1.8.1 67440 2baiA 32 86.20 g.87.1.1 128237 2a8nA 144 88.04 c.97.1.2 126408 2cs7A 55 88.27 d.9.2.1 130748 2b06A 155 89.18 d.113.1.1 127624 3ch0A 272 89.24