# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.2864 1rlyA 60 0.9207 g.41.3.1 104988 1o7nA 449 1.231 b.33.1.2,d.129.3.3 81162,81163 2bmoA 447 1.268 b.33.1.2,d.129.3.3 128804,128805 2apoB 60 1.478 g.41.16.1 127135 1uliA 460 2.377 b.33.1.2,d.129.3.3 107921,107922 2fiyA 309 2.379 e.59.1.1 133540 2gbwA 454 2.685 2qkmB 266 3.004 1q33A 292 3.539 d.113.1.1 95657 2ckfA 454 4.753 1ma3A 253 6.862 c.31.1.5 78883 1ltlA 279 6.955 b.40.4.11 84701 1fqtA 112 7.090 b.33.1.1 24441 2ct7A 86 7.580 g.44.1.4 130791 2di0A 71 8.370 a.5.2.4 131521 1vm9A 111 10.81 b.33.1.1 108886 3c0dA 119 11.05 2j015 60 11.29 1vk6A 269 11.54 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2gmgA 105 13.24 2qjtA 352 13.96 1jhdA 396 15.10 b.122.1.3,c.26.1.5 66712,66713 1y8qB 640 15.47 1yvoA 172 16.07 d.108.1.1 124106 1p91A 269 16.91 c.66.1.33 94378 1twfL 70 17.08 g.41.9.2 112737 1n0zA 45 17.52 g.41.11.1 85247 2e72A 49 18.51 1z02A 446 18.99 2b1xA 470 19.04 b.33.1.2,d.129.3.3 127675,127676 2jz8A 87 19.91 1eu1A 780 20.57 b.52.2.2,c.81.1.1 26903,35311 2qjoA 341 21.29 1g38A 393 21.98 c.66.1.27,d.287.1.1 111567,111568 2qtdA 105 22.00 1xx6A 191 22.93 c.37.1.24,g.39.1.14 116139,116140 1yb0A 159 23.34 d.118.1.1 122865 2i7fA 108 24.81 2vqeR 88 26.93 1o8rA 94 27.19 d.234.1.1 86677 2de6A 392 27.99 b.33.1.2,d.129.3.3 131415,131416 1x6mA 196 28.03 b.88.1.4 114920 2d9kA 75 29.87 2de6D 115 30.21 2vpzA 765 31.17 1gnlA 544 33.17 e.26.1.1 70287 1qxfA 66 33.25 g.41.8.4 96527 2ih2A 421 34.67 1ajjA 37 34.97 g.12.1.1 44609 2aqaA 63 36.27 g.41.16.1 127168 6rxnA 45 36.45 g.41.5.1 45222 2jo6A 113 38.44 2fa8A 105 39.09 c.47.1.23 133185 2uubR 88 39.63 a.4.8.1 139949 1tg0A 68 42.89 1jd5A 124 46.43 g.52.1.1 66544 3c0fB 91 46.92 2e4qA 109 47.48 2q3wA 111 47.70 b.33.1.1 139813 1v54F 98 48.18 g.41.5.3 100327 3cngA 189 54.72 1j8fA 323 55.01 c.31.1.5 62738 2eo0A 147 55.47 2jrrA 67 62.52 1ptqA 50 62.78 g.49.1.1 45349 3c5nA 246 63.00 2pveA 54 64.54 1yuiA 54 66.14 g.37.1.1 45073 1yk4A 52 67.39 1v47A 349 68.15 b.122.1.3,c.26.1.5 100292,100293 1b13A 54 69.26 g.41.5.1 45227 2vccA 891 69.78 1m2dA 110 73.10 c.47.1.11 78476 1kg0C 136 74.14 d.169.1.1 72445 2e01A 457 74.61 1uwmA 106 76.62 d.15.4.1 119763 3bk3C 67 78.21 1q1aA 289 78.41 c.31.1.5 95561 2riqA 160 79.40 2oryA 346 81.09 1brfA 53 84.87 g.41.5.1 45236 2rfkB 53 85.46 1dqcA 74 86.70 g.31.1.1 44964 2cttA 104 87.72 1ayfA 105 89.82 d.15.4.1 37684