# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.05538 1q33A 292 0.2069 d.113.1.1 95657 2apoB 60 0.3227 g.41.16.1 127135 1rlyA 60 0.4989 g.41.3.1 104988 1o7nA 449 0.7470 b.33.1.2,d.129.3.3 81162,81163 1uliA 460 0.9391 b.33.1.2,d.129.3.3 107921,107922 1fqtA 112 1.008 b.33.1.1 24441 2gbwA 454 1.039 1z02A 446 1.040 2ct7A 86 1.198 g.44.1.4 130791 2bmoA 447 1.335 b.33.1.2,d.129.3.3 128804,128805 2ckfA 454 1.585 1p91A 269 2.540 c.66.1.33 94378 3c0dA 119 2.883 2de6A 392 3.112 b.33.1.2,d.129.3.3 131415,131416 2e72A 49 3.435 2qtdA 105 3.470 2b1xA 470 3.912 b.33.1.2,d.129.3.3 127675,127676 1ltlA 279 4.377 b.40.4.11 84701 2e4qA 109 4.733 1eu1A 780 5.156 b.52.2.2,c.81.1.1 26903,35311 1vm9A 111 5.257 b.33.1.1 108886 2qkmB 266 6.160 1gnlA 544 6.241 e.26.1.1 70287 2de6D 115 6.283 1jhdA 396 6.649 b.122.1.3,c.26.1.5 66712,66713 2i7fA 108 7.301 2fa8A 105 8.089 c.47.1.23 133185 2vpzA 765 9.050 1n71A 180 11.59 d.108.1.1 85370 1vk6A 269 11.99 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1y5iA 1246 13.70 b.52.2.2,c.81.1.1 122639,122640 2rfkB 53 14.27 1n0zA 45 15.07 g.41.11.1 85247 1b9vA 390 15.21 b.68.1.1 27603 1ajjA 37 15.43 g.12.1.1 44609 2fiyA 309 15.60 e.59.1.1 133540 2jz8A 87 17.04 1ma3A 253 17.68 c.31.1.5 78883 1nwwA 149 17.77 d.17.4.8 86306 1o13A 136 17.95 c.55.5.1 80762 1s5aA 150 17.99 d.17.4.10 98525 2bngA 149 18.24 2b5lC 222 18.30 1ptqA 50 19.22 g.49.1.1 45349 2aqaA 63 19.65 g.41.16.1 127168 1jd5A 124 20.15 g.52.1.1 66544 1nscA 390 20.42 b.68.1.1 27591 2j015 60 21.98 1a8y 367 24.42 2d9kA 75 24.85 1ptq 50 25.21 1tuhA 156 25.57 d.17.4.11 107345 1twfL 70 25.66 g.41.9.2 112737 1gp0A 143 26.10 b.64.1.1 70300 1qxfA 66 26.28 g.41.8.4 96527 2v3vA 723 26.39 1h0hA 977 26.92 b.52.2.2,c.81.1.1 76435,76436 2qrdA 137 27.16 1tg0A 68 27.77 2jo6A 113 28.81 3bk3C 67 30.77 1j8eA 44 31.72 g.12.1.1 66437 2q3wA 111 31.80 b.33.1.1 139813 1g38A 393 32.35 c.66.1.27,d.287.1.1 111567,111568 1sjwA 144 33.41 d.17.4.9 98899 2napA 723 33.88 b.52.2.2,c.81.1.1 26926,35334 1l3yA 41 35.73 g.3.11.6 73558 1dqcA 74 36.98 g.31.1.1 44964 1kqfA 1015 37.28 b.52.2.2,c.81.1.1 72871,72872 1cl4A 60 38.62 g.40.1.1 45171 2vqeR 88 39.36 3cngA 189 39.37 1x6mA 196 39.53 b.88.1.4 114920 1dvpA 220 39.54 a.118.9.2,g.50.1.1 19216,45358 1xx6A 191 40.20 c.37.1.24,g.39.1.14 116139,116140 2qjtA 352 40.80 1ss3A 50 40.84 g.2.3.1 105975 1l5pA 93 40.86 d.15.4.1 73598 1yk4A 52 41.96 1lb3A 182 41.99 a.25.1.1 77873 1brfA 53 42.01 g.41.5.1 45236 2riqA 160 42.05 1oh0A 131 45.47 d.17.4.3 87004 6rxnA 45 45.50 g.41.5.1 45222 2fiwA 172 46.76 d.108.1.1 133539 2cihA 183 47.03 1z6oA 212 47.04 a.25.1.1 124531 2gaiA 633 47.60 1lml 478 48.30 2iv2X 715 48.82 b.52.2.2,c.81.1.1 137714,137715 1z6oM 191 49.13 a.25.1.1 124543 2nx8A 179 49.33 1b13A 54 49.73 g.41.5.1 45227 2pveA 54 50.18 2jroA 78 51.94 2bt6A 108 52.81 d.15.4.1 129152 1p6oA 161 54.37 c.97.1.2 94185 1o8rA 94 55.29 d.234.1.1 86677 1uwmA 106 55.37 d.15.4.1 119763 1rb9A 52 57.28 g.41.5.1 45214 2pvxA 54 57.43 2di0A 71 57.79 a.5.2.4 131521 2i7cA 283 58.75 2e7zA 727 59.55 3c4zA 543 60.86 2uubR 88 61.09 a.4.8.1 139949 1ayfA 105 62.18 d.15.4.1 37684 2ooxA 137 62.64 1dmmA 131 62.66 d.17.4.3 38114 2oryA 346 64.59 1oqqA 106 64.60 d.15.4.1 93422 1yuiA 54 65.19 g.37.1.1 45073 1r03A 182 65.39 a.25.1.1 104675 1r7sA 106 65.46 d.15.4.1 97207 1xlqA 106 66.80 d.15.4.1 122119 1tgsI 56 67.24 g.68.1.1 44706 1e6eB 128 68.22 d.15.4.1 59300 2jrrA 67 70.11 1yfuA 174 70.49 b.82.1.20 123094 1xpaA 122 70.93 a.6.1.2,g.39.1.5 16308,45151 2ih2A 421 71.19 2conA 79 71.95 g.41.15.1 130680 2pm7B 297 72.31 1ohpA 125 72.57 d.17.4.3 118702 1yb0A 159 72.60 d.118.1.1 122865 2yxxA 386 73.10 1hk8A 605 74.14 c.7.1.3 83540 2fkiA 126 75.82 d.198.3.1 133657 1g8kA 825 76.35 b.52.2.2,c.81.1.1 26920,35328 2hf1A 68 76.39 1pq7A 224 80.30 b.47.1.2 95002 1wwrA 171 81.60 c.97.1.2 121366 1lv3A 68 81.99 g.39.1.9 78231 1wo3A 25 83.36 1t44G 147 83.68 d.109.1.1 106395 1mmcA 30 83.78 g.3.1.2 44061 2a6sA 84 84.52 d.298.1.1 126305 1iroA 54 85.60 g.41.5.1 45223 1xphA 150 86.21 d.169.1.1 122211 3bidA 64 86.83 2ozhA 142 89.02 2qjoA 341 89.33 1qf8A 182 89.69 g.41.4.1 45212